Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 1.2e-178 629.8 332 100.0
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.4e-30 137.1 185 46.5
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.2e-24 118.2 135 49.6
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 2.4e-22 110.5 156 45.5
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 7.1e-22 109.0 224 36.6
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 9.3e-22 108.6 153 49.0
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 2.1e-21 107.5 145 46.9
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 2.7e-21 107.1 154 43.5
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.3e-20 104.8 99 60.6
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 5.1e-20 102.8 153 43.8
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.5e-19 101.3 153 43.1
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 5.6e-19 99.4 74 71.6
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 2.1e-18 97.4 153 45.8
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 2.8e-18 97.1 153 45.1
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.6e-18 96.7 136 47.1
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 4.8e-18 96.3 72 70.8
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 4.8e-18 96.3 153 45.1
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 6.2e-18 95.9 73 69.9
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.1e-17 95.1 153 43.8
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.4e-17 94.7 67 70.1
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.8e-17 94.4 106 51.9
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.8e-17 94.4 62 74.2
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 4.0e-17 93.2 75 61.3
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 4.0e-17 93.2 75 61.3
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 5.3e-17 92.8 72 63.9
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 6.9e-17 92.4 177 38.4
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 9.0e-17 92.0 70 68.6
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 9.0e-17 92.0 72 63.9
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.0e-16 90.9 98 56.1
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.6e-16 90.5 75 66.7
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 2.6e-16 90.5 75 66.7
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 4.5e-16 89.7 72 62.5
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 4.5e-16 89.7 153 41.2
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 5.8e-16 89.4 74 60.8
Hma1.2p1_0842F.1_g227160 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 5.8e-16 89.4 111 46.8
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 7.6e-16 89.0 168 38.1
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 7.6e-16 89.0 68 67.6
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 9.9e-16 88.6 72 66.7
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 9.9e-16 88.6 61 70.5
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 1.3e-15 88.2 52 82.7
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.3e-15 88.2 72 65.3
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 1.7e-15 87.8 73 63.0
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 2.2e-15 87.4 78 56.4
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 3.8e-15 86.7 71 62.0
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 4.9e-15 86.3 61 67.2
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 6.4e-15 85.9 72 62.5
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.1e-14 85.1 58 69.0
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 1.9e-14 84.3 64 67.2
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.9e-14 84.3 71 63.4
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.4e-14 84.0 70 61.4
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 2.4e-14 84.0 76 55.3
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 2.4e-14 84.0 71 59.2
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.2e-14 83.6 67 65.7
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 3.2e-14 83.6 67 67.2
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 5.4e-14 82.8 64 65.6
Lj1A285T19 Lonicera japonica HOM05D007144 ORTHO05D008709 5.4e-14 82.8 91 48.4
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 7.1e-14 82.4 61 65.6
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 9.3e-14 82.0 134 39.6
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.2e-13 81.6 72 61.1
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 1.2e-13 81.6 64 65.6
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.6e-13 81.3 71 60.6
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.6e-13 81.3 53 75.5
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.6e-13 81.3 65 66.2
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 2.1e-13 80.9 55 70.9
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 2.1e-13 80.9 71 60.6
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 2.7e-13 80.5 114 43.0
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 2.7e-13 80.5 68 64.7
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 2.7e-13 80.5 68 64.7
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 2.7e-13 80.5 71 59.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 3.5e-13 80.1 54 72.2
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 4.6e-13 79.7 58 65.5
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.6e-13 79.7 74 56.8
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 4.6e-13 79.7 62 64.5
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 6.0e-13 79.3 70 58.6
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 6.0e-13 79.3 70 58.6
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 6.0e-13 79.3 70 58.6
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 6.0e-13 79.3 65 63.1
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 6.0e-13 79.3 57 64.9
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.0e-12 78.6 65 64.6
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.3e-12 78.2 51 72.5
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.3e-12 78.2 64 65.6
Sc08g0003580 Simmondsia chinensis HOM05D026759 ORTHO05D008709 1.3e-12 78.2 93 58.1
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 2.3e-12 77.4 61 63.9
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.3e-12 77.4 73 56.2
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 3.0e-12 77.0 57 64.9
Sc01g0005750 Simmondsia chinensis HOM05D026759 ORTHO05D008709 3.0e-12 77.0 177 36.7
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 3.0e-12 77.0 60 65.0
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 3.9e-12 76.6 68 57.4
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 5.1e-12 76.3 68 57.4
Sc24g0001060 Simmondsia chinensis HOM05D026759 ORTHO05D008709 8.7e-12 75.5 189 36.5
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.1e-11 75.1 59 62.7
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.9e-11 74.3 65 60.0
Cfa010648 Carpinus fangiana HOM05D007144 ORTHO05D008709 2.5e-11 73.9 86 52.3
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.5e-11 73.9 55 67.3
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 7.4e-11 72.4 62 58.1
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 1.3e-10 71.6 62 61.3
Sc03g0004590 Simmondsia chinensis HOM05D026759 ORTHO05D008709 2.1e-10 70.9 142 43.7
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 1.1e-09 68.6 41 80.5
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 6.9e-09 65.9 65 58.5
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.2e-08 65.1 53 64.2
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 4.5e-08 63.2 51 64.7
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 1.7e-07 61.2 55 61.8
Lj5C163G6 Lonicera japonica HOM05D000413 ORTHO05D000292 4.9e-07 59.7 103 36.9
Medtr2g017825 Medicago truncatula HOM05D000088 ORTHO05D003056 8.4e-07 58.9 127 32.3
PSO541G4399 Papaver somniferum HOM05D000088 ORTHO05D003056 1.1e-06 58.5 98 35.7
PSO675G0954 Papaver somniferum HOM05D000088 ORTHO05D003056 2.5e-06 57.4 98 34.7
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 3.2e-06 57.0 65 44.6
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 3.2e-06 57.0 62 46.8
ClCG02G022890 Citrullus lanatus HOM05D007144 ORTHO05D008709 4.2e-06 56.6 171 32.7
arahy.Tifrunner.gnm1.ann1.SD5LLS Arachis hypogaea HOM05D000088 ORTHO05D003056 5.5e-06 56.2 89 36.0
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 5.5e-06 56.2 59 44.1
Lj6g0019783 Lotus japonicus HOM05D000088 ORTHO05D003056 5.5e-06 56.2 126 31.7
Psat1g193640 Pisum sativum HOM05D000088 ORTHO05D003056 5.5e-06 56.2 89 37.1
Pp3c2_27120 Physcomitrium patens HOM05D007144 ORTHO05D008709 7.1e-06 55.8 47 55.3
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 9.3e-06 55.5 48 58.3
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 9.3e-06 55.5 46 63.0
Solyc07g055870.4 Solanum lycopersicum HOM05D000088 ORTHO05D003056 9.3e-06 55.5 102 31.4


User provided reference genes

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