Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.1e-243 846.3 432 100.0
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 8.1e-228 793.5 440 93.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 2.7e-207 725.3 437 83.5
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 4.6e-207 724.5 443 83.5
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.0e-206 721.8 438 84.2
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.0e-206 721.8 441 83.2
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.8e-206 720.3 442 83.5
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.2e-204 715.7 437 84.2
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 9.1e-203 710.3 440 82.0
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.5e-202 709.5 436 82.6
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 3.4e-202 708.4 437 82.8
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 5.9e-202 707.6 434 82.5
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.2e-201 705.7 436 82.6
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.5e-200 702.2 441 81.4
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 9.4e-200 700.3 437 81.9
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 9.4e-200 700.3 442 81.2
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.2e-199 699.9 437 82.2
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.1e-199 699.1 436 80.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.4e-198 696.4 442 80.5
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 3.0e-198 695.3 454 78.9
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 6.7e-198 694.1 443 80.8
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.7e-198 694.1 434 81.6
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.8e-198 693.7 430 81.6
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 8.8e-198 693.7 430 82.8
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.3e-197 691.8 433 80.8
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 3.3e-197 691.8 436 81.4
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.4e-197 691.4 438 80.8
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 4.4e-197 691.4 435 80.2
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 5.7e-197 691.0 440 80.9
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 5.7e-197 691.0 433 81.5
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 7.4e-197 690.6 422 82.5
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 7.4e-197 690.6 422 82.5
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 7.4e-197 690.6 442 80.1
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 9.7e-197 690.3 437 81.7
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-196 689.1 433 80.4
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.8e-196 688.7 437 81.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 3.7e-196 688.3 431 81.2
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 6.3e-196 687.6 442 80.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 8.2e-196 687.2 426 81.7
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 8.2e-196 687.2 426 81.7
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 8.2e-196 687.2 426 81.7
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 80.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 2.4e-195 685.6 432 81.2
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.4e-195 685.6 436 80.7
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 5.3e-195 684.5 426 81.5
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 5.3e-195 684.5 435 79.3
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.3e-195 684.5 431 80.0
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.0e-195 684.1 435 79.3
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 7.0e-195 684.1 435 79.3
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.0e-195 684.1 430 80.5
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.1e-195 683.7 435 79.1
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 9.1e-195 683.7 434 80.6
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.2e-194 683.3 441 80.5
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.5e-194 682.9 442 80.3
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 2.0e-194 682.6 425 81.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.6e-194 682.2 432 81.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 2.6e-194 682.2 430 80.5
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.5e-194 681.8 424 82.3
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 4.5e-194 681.4 425 81.4
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 7.7e-194 680.6 425 81.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 7.7e-194 680.6 439 79.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 7.7e-194 680.6 438 79.9
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 7.7e-194 680.6 438 79.9
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.0e-193 680.2 425 81.4
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.0e-193 680.2 433 80.8
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.0e-193 680.2 424 80.2
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.0e-193 680.2 424 80.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.7e-193 679.5 425 81.4
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 2.2e-193 679.1 432 79.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 2.9e-193 678.7 435 78.2
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 3.8e-193 678.3 427 81.0
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 3.8e-193 678.3 425 81.2
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 5.0e-193 677.9 428 81.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 5.0e-193 677.9 425 80.5
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.5e-193 677.6 427 80.3
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 8.5e-193 677.2 431 80.5
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 8.5e-193 677.2 425 81.2
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.1e-192 676.8 414 80.0
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.4e-192 676.4 443 77.4
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.9e-192 676.0 425 80.5
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.5e-192 675.6 424 80.4
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.2e-192 675.2 424 80.7
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 7.2e-192 674.1 427 81.0
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 7.2e-192 674.1 421 79.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 7.2e-192 674.1 429 80.9
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.6e-191 672.9 447 77.6
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.6e-191 672.9 420 81.2
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.6e-191 672.9 419 80.7
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.6e-191 671.8 470 74.7
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.6e-191 671.8 424 80.4
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.3e-190 669.1 433 78.8
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.2e-190 667.9 425 80.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.7e-190 667.5 403 82.1
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.1e-189 666.8 429 78.6
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.5e-189 666.4 427 80.1
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 3.3e-189 665.2 429 77.2
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.4e-189 664.8 425 80.2
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 4.4e-189 664.8 429 78.6
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.3e-188 663.3 435 77.5
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 1.7e-188 662.9 425 80.2
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.2e-188 662.5 429 77.2
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.8e-188 662.1 425 80.0
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.7e-188 661.8 485 73.0
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 8.2e-188 660.6 431 77.7
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-187 660.2 433 77.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.4e-187 659.8 435 76.8
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 4.1e-187 658.3 445 74.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.1e-187 658.3 435 76.3
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 9.1e-187 657.1 429 76.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.1e-187 657.1 433 77.4
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.2e-186 656.8 431 79.6
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 3.5e-186 655.2 429 76.9
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 5.9e-186 654.4 517 68.3
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.3e-185 653.3 430 77.4
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.9e-185 652.1 443 75.6
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 8.0e-183 644.0 434 75.1
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.0e-183 644.0 464 73.9
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 3.3e-181 638.6 557 62.7
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.7e-180 635.2 384 82.0
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.7e-180 635.2 425 77.9
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 5.9e-178 627.9 439 74.7
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 6.5e-177 624.4 436 72.9
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.5e-176 622.5 400 78.2
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.1e-175 619.4 426 74.6
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.4e-174 616.7 423 75.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.0e-173 612.8 419 72.6
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 5.7e-173 611.3 380 80.3
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.3e-172 607.4 425 72.9
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-171 607.1 427 72.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.8e-171 606.3 432 70.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.2e-170 603.6 384 78.6
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.6e-167 593.2 397 73.6
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 9.8e-165 583.9 342 83.0
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 7.0e-163 577.8 362 80.4
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.2e-162 577.0 361 80.1
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.9e-160 569.7 349 84.5
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 7.3e-160 567.8 353 82.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.6e-159 565.5 350 81.7
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 1.8e-158 563.1 335 85.1
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 2.8e-151 539.3 431 67.5
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.2e-149 533.9 382 68.1
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 3.5e-146 522.3 384 69.3
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 2.5e-144 516.2 395 68.1
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 4.3e-144 515.4 361 72.9
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.8e-142 508.1 348 75.0
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.6e-141 506.1 434 62.2
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 2.4e-139 499.6 365 70.7
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 6.9e-126 454.9 261 84.3
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.7e-122 443.0 316 69.0
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.3e-119 434.1 269 82.2
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 2.4e-118 429.9 267 78.7
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 8.7e-113 411.4 392 57.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 6.9e-102 375.2 233 82.0
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 5.9e-93 345.5 231 76.6
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-90 337.4 238 71.0
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 8.8e-89 331.6 188 88.3
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.9e-84 316.6 193 82.9
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 3.3e-80 303.1 355 50.1
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 6.3e-79 298.9 362 44.5
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 5.3e-70 269.2 155 80.6
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.2e-64 251.5 192 64.6
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.2e-64 251.5 192 64.6
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.2e-63 247.3 146 84.2
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.1e-59 235.0 220 62.7
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-56 223.4 244 55.7
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.4e-46 190.7 136 66.9
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 5.8e-40 169.5 99 83.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 6.2e-34 149.4 220 47.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.9e-33 145.6 295 38.6
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.1e-25 120.6 82 74.4
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.4e-24 117.1 74 81.1
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 4.3e-19 100.1 89 64.0
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.2e-18 98.6 59 83.1
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.2e-18 98.6 59 83.1
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 6.8e-17 92.8 79 62.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.4e-16 90.1 90 54.4
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.1e-14 85.5 45 86.7
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 3.2e-14 84.0 83 55.4
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.3e-12 78.6 47 83.0
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 7.3e-11 72.8 44 79.5
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 1.1e-09 68.9 74 52.7
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 3.1e-09 67.4 74 54.1
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 1.2e-08 65.5 43 76.7
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.6e-08 64.3 74 52.7
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 5.8e-08 63.2 46 63.0


User provided reference genes

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