Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 2.0e-103 379.0 185 100.0
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.8e-92 342.0 186 87.1
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.8e-92 342.0 186 87.6
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.6e-92 341.7 186 86.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.8e-91 339.3 186 84.9
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.8e-91 339.3 186 86.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 87.6
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 86.6
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 84.9
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 85.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 6.8e-91 337.4 186 86.6
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 8.9e-91 337.0 186 86.0
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.2e-90 336.7 186 86.0
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 84.9
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.9
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.9
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.9
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.9
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 84.4
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 83.9
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 84.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 84.9
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 7.6e-90 334.0 185 85.4
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 83.9
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 85.5
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 83.9
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.3e-89 333.2 185 83.8
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 85.5
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 84.9
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 2.9e-89 332.0 185 84.9
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.9e-89 332.0 184 84.2
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 84.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 84.4
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 4.9e-89 331.3 186 83.3
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 6.4e-89 330.9 188 83.0
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 6.4e-89 330.9 185 83.8
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 8.4e-89 330.5 182 84.6
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 8.4e-89 330.5 186 83.3
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.1e-88 330.1 186 83.3
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.1e-88 330.1 186 83.9
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 186 83.3
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 186 84.4
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 184 84.2
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.4e-88 329.7 185 84.3
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 184 84.2
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.9e-88 329.3 186 83.9
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 2.4e-88 328.9 184 84.2
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.1e-88 328.2 186 83.9
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 9.2e-88 327.0 184 83.2
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 9.2e-88 327.0 184 83.2
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 83.9
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 83.3
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.6e-87 326.2 186 81.7
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.6e-87 326.2 182 83.0
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.6e-87 326.2 182 83.0
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 83.2
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 82.6
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 185 83.8
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 3.5e-87 325.1 180 83.9
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 4.6e-87 324.7 188 81.9
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.6e-87 324.7 186 82.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 81.5
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 7.8e-87 323.9 178 85.4
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 7.8e-87 323.9 188 80.9
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 7.8e-87 323.9 186 81.2
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 7.8e-87 323.9 180 83.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.0e-86 323.6 186 81.2
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.0e-86 323.6 180 83.3
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.0e-86 323.6 180 83.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 1.7e-86 322.8 180 83.3
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 1.7e-86 322.8 180 83.3
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.7e-86 322.8 186 82.3
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-86 322.8 185 82.7
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.7e-86 322.8 184 81.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 2.3e-86 322.4 180 83.9
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.3e-86 322.4 186 82.3
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.3e-86 322.4 186 82.3
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.0e-86 322.0 180 82.8
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.9e-86 321.6 186 81.2
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 5.1e-86 321.2 174 87.9
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 83.3
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-85 320.1 184 82.6
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.9e-85 319.3 184 82.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.9e-85 319.3 184 82.1
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 81.1
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 81.7
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 81.7
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 81.7
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.5e-85 318.9 182 81.9
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 5.6e-85 317.8 180 81.1
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 5.6e-85 317.8 186 79.0
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 7.3e-85 317.4 180 81.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.3e-85 317.4 184 81.5
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 9.6e-85 317.0 185 81.6
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.1e-84 315.8 180 81.1
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 2.1e-84 315.8 180 81.1
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 3.6e-84 315.1 188 78.7
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.1e-83 312.0 184 81.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.6e-82 308.9 186 75.8
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 5.8e-82 307.8 186 79.0
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 5.8e-82 307.8 172 84.3
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 9.9e-82 307.0 184 78.3
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.3e-81 306.6 187 79.7
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.9e-81 304.7 186 78.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-80 303.5 186 78.0
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.1e-80 303.5 187 79.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 7.1e-80 300.8 186 79.6
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 4.6e-79 298.1 186 78.5
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.3e-78 296.6 185 75.7
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 2.5e-77 292.4 186 75.3
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 9.6e-77 290.4 186 75.8
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 3.6e-76 288.5 186 74.7
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 8.1e-76 287.3 186 74.2
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 4.0e-75 285.0 186 73.7
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 5.3e-75 284.6 186 72.6
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 5.3e-75 284.6 186 73.1
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 9.0e-75 283.9 186 73.1
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.5e-74 283.1 184 71.2
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 9.9e-74 280.4 173 76.3
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 4.0e-67 258.5 186 64.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 4.3e-61 238.4 183 55.7
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 2.5e-56 222.6 180 56.1
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.0e-54 217.2 177 53.7
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 3.3e-53 212.2 171 63.2
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.7e-53 211.5 187 52.9
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 3.7e-52 208.8 183 50.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 9.0e-51 204.1 187 51.3
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 4.8e-44 181.8 168 51.8
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.9e-40 169.9 180 49.4
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 1.3e-36 157.1 89 83.1
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.2e-31 140.6 172 45.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.7e-25 120.2 88 63.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 5.7e-21 105.1 157 35.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 9.1e-19 97.8 54 83.3


User provided reference genes

Program Settings