Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 7.7e-155 550.4 277 100.0
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 6.4e-109 397.9 257 73.9
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 9.2e-108 394.0 257 74.7
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 3.5e-107 392.1 257 74.3
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 6.0e-107 391.3 257 74.3
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 1.7e-106 389.8 255 72.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.5e-105 386.0 257 72.8
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 9.5e-105 384.0 257 71.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.2e-104 383.6 258 72.1
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.6e-104 383.3 255 72.2
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.1e-104 382.9 257 72.0
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.8e-104 382.5 254 70.1
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 4.7e-104 381.7 257 71.6
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 6.2e-104 381.3 257 70.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 8.1e-104 380.9 257 70.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.4e-103 380.2 253 73.5
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.4e-103 380.2 257 71.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.0e-103 378.6 257 72.4
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 4.0e-103 378.6 249 72.7
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 8.9e-103 377.5 251 75.3
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.2e-102 377.1 257 71.6
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.5e-102 376.7 255 72.9
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.5e-102 376.7 255 72.9
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.0e-102 376.3 257 71.6
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.6e-102 375.9 252 71.8
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 3.4e-102 375.6 257 70.8
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.6e-102 374.4 257 69.3
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 7.6e-102 374.4 257 70.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 9.9e-102 374.0 257 71.2
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.2e-101 372.9 257 71.2
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.9e-101 372.5 257 71.2
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.7e-101 372.1 257 70.8
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 6.4e-101 371.3 247 72.1
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 6.4e-101 371.3 257 70.8
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 8.4e-101 370.9 245 72.2
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.4e-100 370.2 257 70.4
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.9e-100 369.8 257 70.8
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 3.2e-100 369.0 258 70.5
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 4.1e-100 368.6 257 71.6
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.1e-100 367.9 257 68.9
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-99 367.1 258 69.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.2e-99 367.1 257 66.5
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.2e-99 367.1 257 66.5
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.2e-99 367.1 257 69.6
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.6e-99 366.7 257 70.0
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.7e-99 365.9 257 71.2
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 3.5e-99 365.5 257 70.4
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.6e-99 365.2 245 71.4
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.0e-98 364.0 257 70.0
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.7e-98 363.2 257 69.3
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.7e-98 363.2 257 68.9
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 5.1e-98 361.7 257 69.6
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 6.6e-98 361.3 257 69.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 8.6e-98 360.9 257 70.0
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.5e-97 360.1 257 70.0
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.5e-97 360.1 257 70.0
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.5e-97 360.1 257 70.0
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 4.3e-97 358.6 253 70.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 5.6e-97 358.2 257 68.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 7.3e-97 357.8 257 68.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 9.6e-97 357.5 245 71.0
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.2e-96 357.1 257 70.0
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.6e-96 356.7 257 70.4
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.1e-96 356.3 255 67.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 2.1e-96 356.3 257 68.9
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 4.7e-96 355.1 275 65.5
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 8.1e-96 354.4 257 65.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.8e-95 353.2 252 69.4
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 2.6e-94 349.4 255 68.2
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 2.6e-94 349.4 255 68.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.9e-93 345.9 231 70.6
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.2e-92 342.4 255 65.5
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 9.3e-92 340.9 257 66.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.2e-91 340.5 257 66.9
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.2e-91 340.5 257 66.9
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.2e-91 340.5 255 65.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 3.5e-91 339.0 255 64.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 4.6e-91 338.6 277 60.6
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.3e-90 336.3 214 75.2
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.9e-90 335.5 257 62.3
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 5.6e-89 331.6 257 63.8
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.1e-87 325.9 258 63.6
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.0e-86 323.2 259 62.2
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 4.6e-83 312.0 257 61.5
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-81 307.4 257 58.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.5e-81 307.0 218 67.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 3.3e-81 305.8 218 67.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 4.3e-81 305.4 247 65.2
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.1e-80 303.1 257 59.5
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 8.1e-80 301.2 259 59.8
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.4e-79 300.4 255 57.3
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 2.2e-77 293.1 255 60.8
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 2.2e-77 293.1 201 73.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 2.4e-76 289.7 257 56.8
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.0e-74 284.3 212 67.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.0e-66 257.7 251 51.0
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.8e-64 248.8 255 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.1e-63 247.7 253 49.8
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 5.5e-60 235.3 275 45.8
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.9e-58 229.2 243 48.6
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.3e-56 221.9 226 50.0
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 8.8e-50 201.4 246 40.2
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.3e-49 199.1 243 43.2
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.7e-45 187.2 262 38.9
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 2.5e-44 183.3 268 36.9
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.3e-42 176.8 193 50.8
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-39 167.9 223 45.3
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.1e-39 166.4 255 39.6
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.6e-33 146.7 102 65.7
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.4e-31 141.0 153 52.9
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.5e-30 136.0 128 53.1
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 2.3e-26 123.6 135 53.3
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.7e-24 117.5 97 61.9
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 2.2e-24 117.1 86 66.3
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.2e-24 117.1 304 27.6
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 5.9e-22 109.0 259 28.6
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.0e-21 108.2 103 56.3
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.0e-21 108.2 103 56.3
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.9e-20 104.0 85 61.2
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-19 101.3 130 46.9
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 8.6e-13 78.6 78 57.7
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 5.6e-12 75.9 51 70.6
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.5e-06 56.6 48 60.4
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.6e-06 56.2 44 59.1


User provided reference genes

Program Settings