Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 8.4e-39 163.3 88 100.0
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.6e-13 77.8 72 59.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 6.1e-13 77.4 79 53.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 7.9e-13 77.0 74 58.1
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 7.9e-13 77.0 74 59.5
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.4e-12 76.3 69 60.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 3.0e-12 75.1 74 58.1
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.9e-12 74.7 72 58.3
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 3.9e-12 74.7 74 59.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 5.1e-12 74.3 71 57.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 6.7e-12 73.9 74 54.1
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 6.7e-12 73.9 70 60.0
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 8.8e-12 73.6 72 54.2
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.1e-11 73.2 72 54.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 73 56.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.0e-11 72.4 71 56.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.5e-11 72.0 75 54.7
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 3.3e-11 71.6 71 56.3
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.3e-11 71.6 82 48.8
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.3e-11 71.2 73 56.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.3e-11 71.2 71 56.3
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 5.7e-11 70.9 71 56.3
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.4e-11 70.5 70 55.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 7.4e-11 70.5 82 52.4
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 9.7e-11 70.1 67 58.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.7e-11 70.1 79 53.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.7e-11 70.1 79 53.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.3e-10 69.7 82 52.4
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-10 69.3 72 55.6
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.7e-10 69.3 71 53.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-10 68.9 69 55.1
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 2.2e-10 68.9 74 50.0
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.8e-10 68.6 71 53.5
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.8e-10 68.6 71 53.5
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.8e-10 68.6 71 53.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.8e-10 68.6 88 51.1
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.8e-10 68.6 80 48.8
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.8e-10 68.6 69 56.5
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 3.7e-10 68.2 67 55.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.7e-10 68.2 69 55.1
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.7e-10 68.2 75 57.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 4.8e-10 67.8 70 52.9
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.8e-10 67.8 84 51.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.3e-10 67.4 69 55.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 8.2e-10 67.0 71 52.1
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 8.2e-10 67.0 68 57.4
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 8.2e-10 67.0 67 55.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 8.2e-10 67.0 69 58.0
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.2e-10 67.0 68 55.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-09 66.6 71 52.1
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-09 66.6 71 52.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-09 66.6 68 54.4
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.1e-09 66.6 72 52.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.4e-09 66.2 62 62.9
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 68 58.8
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.4e-09 66.2 71 54.9
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 72 54.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-09 66.2 72 54.2
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.4e-09 66.2 67 59.7
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.4e-09 66.2 70 52.9
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.4e-09 66.2 72 52.8
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.8e-09 65.9 70 54.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.8e-09 65.9 72 54.2
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.4e-09 65.5 85 43.5
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.4e-09 65.5 70 54.3
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 3.1e-09 65.1 69 53.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 3.1e-09 65.1 71 50.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.1e-09 64.7 78 47.4
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.1e-09 64.7 70 52.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.3e-09 64.3 71 49.3
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 5.3e-09 64.3 67 50.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.3e-09 64.3 80 51.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 5.3e-09 64.3 68 52.9
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.3e-09 64.3 69 52.2
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 6.9e-09 63.9 67 55.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.9e-09 63.9 69 53.6
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 6.9e-09 63.9 71 54.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 6.9e-09 63.9 66 59.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 6.9e-09 63.9 66 59.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 9.1e-09 63.5 72 50.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 9.1e-09 63.5 66 57.6
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.1e-09 63.5 67 56.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 9.1e-09 63.5 73 53.4
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.2e-08 63.2 69 50.7
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.2e-08 63.2 70 52.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.5e-08 62.8 69 50.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.0e-08 62.4 69 49.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.0e-08 62.4 69 49.3
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.4e-08 61.6 68 50.0
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.4e-08 61.6 70 48.6
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.4e-08 61.6 73 45.2
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.4e-08 61.6 72 47.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.4e-08 61.6 67 56.7
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.4e-08 61.6 67 55.2
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.4e-08 61.6 68 54.4
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.5e-08 61.2 68 47.1
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.9e-08 60.8 68 47.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 5.9e-08 60.8 62 50.0
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 5.9e-08 60.8 64 56.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.0e-07 60.1 67 50.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-07 60.1 69 53.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.0e-07 60.1 68 52.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-07 59.7 70 50.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.7e-07 59.3 69 52.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.7e-07 59.3 64 56.2
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.2e-07 58.9 70 51.4
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.9e-07 58.5 70 48.6
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.9e-07 58.5 70 51.4
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.9e-07 58.5 70 50.0
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 3.8e-07 58.2 86 37.2
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.8e-07 58.2 85 41.2
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 3.8e-07 58.2 70 52.9
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.8e-07 58.2 73 47.9
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.0e-07 57.8 81 40.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.0e-07 57.8 69 50.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 5.0e-07 57.8 61 52.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 6.5e-07 57.4 70 47.1
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.5e-07 57.4 79 45.6
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 8.5e-07 57.0 72 52.8
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 8.5e-07 57.0 67 49.3
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.1e-06 56.6 62 51.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.1e-06 56.6 68 50.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-06 56.6 70 44.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-06 56.6 70 44.3
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.1e-06 56.6 75 46.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.4e-06 56.2 67 47.8
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-06 55.8 69 52.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.5e-06 55.5 60 53.3
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.5e-06 55.5 71 47.9
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.2e-06 55.1 72 45.8
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 4.2e-06 54.7 58 51.7
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.2e-06 53.9 66 48.5
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 7.2e-06 53.9 68 44.1
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 9.4e-06 53.5 81 38.3


User provided reference genes

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