Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 3.3e-96 355.1 194 100.0
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 7.0e-46 188.0 113 80.5
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.1e-43 180.6 177 55.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.9e-43 179.9 120 69.2
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 7.3e-43 177.9 185 53.0
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 2.1e-42 176.4 119 69.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.0e-41 174.1 155 58.7
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 3.1e-41 172.6 154 58.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 4.0e-41 172.2 155 58.1
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 6.8e-41 171.4 100 83.0
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 4.4e-40 168.7 174 55.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 9.8e-40 167.5 177 52.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.4e-38 163.7 183 47.0
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 7.8e-37 157.9 146 56.2
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.0e-36 157.5 185 49.2
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 3.3e-35 152.5 122 60.7
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 3.3e-35 152.5 122 59.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.3e-35 152.5 122 59.0
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 4.3e-35 152.1 123 57.7
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 7.3e-35 151.4 122 56.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 3.6e-34 149.1 113 63.7
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 4.7e-34 148.7 183 45.9
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 6.2e-34 148.3 168 48.2
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 1.1e-33 147.5 181 45.3
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.8e-33 146.7 159 50.3
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.1e-33 146.0 141 52.5
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.1e-33 146.0 177 44.6
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 4.0e-33 145.6 122 55.7
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 4.0e-33 145.6 122 55.7
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 5.2e-33 145.2 120 55.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 8.9e-33 144.4 175 46.3
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.5e-32 143.7 120 55.0
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.0e-32 143.3 159 46.5
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 3.4e-32 142.5 162 49.4
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 5.8e-32 141.7 178 45.5
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 5.8e-32 141.7 119 55.5
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 9.8e-32 141.0 120 55.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 9.8e-32 141.0 153 50.3
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 9.8e-32 141.0 114 57.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 4.9e-31 138.7 113 61.1
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 6.4e-31 138.3 141 50.4
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 6.4e-31 138.3 161 45.3
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 6.4e-31 138.3 161 45.3
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 6.4e-31 138.3 161 45.3
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 6.4e-31 138.3 123 52.8
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 8.3e-31 137.9 147 50.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 8.3e-31 137.9 135 48.9
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.1e-30 137.5 119 53.8
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.1e-30 137.5 167 45.5
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.1e-30 137.5 121 54.5
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 1.4e-30 137.1 135 51.9
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.9e-30 136.7 121 53.7
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 1.9e-30 136.7 121 54.5
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.4e-30 136.3 119 53.8
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 2.4e-30 136.3 154 48.7
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 3.2e-30 136.0 135 51.1
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.2e-30 136.0 121 53.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.2e-30 136.0 121 53.7
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 3.2e-30 136.0 121 53.7
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 3.2e-30 136.0 120 54.2
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 7.1e-30 134.8 180 44.4
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 7.1e-30 134.8 121 53.7
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 9.2e-30 134.4 188 42.6
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 2.1e-29 133.3 166 47.0
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 2.7e-29 132.9 121 54.5
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 3.5e-29 132.5 121 50.4
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 6.0e-29 131.7 121 52.9
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.3e-28 129.8 123 52.0
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 3.0e-28 129.4 195 42.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.1e-28 128.6 117 55.6
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 5.1e-28 128.6 167 44.9
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 6.6e-28 128.3 184 40.2
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 6.6e-28 128.3 116 52.6
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 2.5e-27 126.3 119 52.1
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 7.3e-27 124.8 181 43.1
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 9.5e-27 124.4 144 45.1
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 9.5e-27 124.4 110 55.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 9.5e-27 124.4 194 42.3
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 3.6e-26 122.5 119 48.7
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.1e-25 120.9 93 65.6
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 1.4e-25 120.6 119 45.4
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 8.9e-25 117.9 86 67.4
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.2e-24 117.5 145 42.1
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.0e-24 116.7 78 70.5
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.9e-23 112.8 150 40.0
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 2.9e-23 112.8 144 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.8e-23 112.5 84 66.7
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.4e-22 110.5 121 45.5
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.4e-22 110.5 88 61.4
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 1.9e-22 110.2 89 60.7
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 3.2e-22 109.4 118 50.0
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 7.1e-22 108.2 185 36.8
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 4.6e-21 105.5 116 47.4
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.7e-20 103.6 82 67.1
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 3.3e-19 99.4 119 43.7
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 6.2e-18 95.1 89 52.8
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 7.8e-13 78.2 70 51.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.5e-11 73.9 55 58.2
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.3e-10 70.9 138 34.1
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 4.8e-10 68.9 114 35.1
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 8.1e-10 68.2 100 35.0
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 6.4e-07 58.5 76 42.1
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 1.1e-06 57.8 76 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.4e-06 57.4 107 28.0
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 1.4e-06 57.4 47 53.2
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.4e-06 57.4 110 24.5
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 2.4e-06 56.6 65 43.1
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 5.4e-06 55.5 110 25.5


User provided reference genes

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