Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 6.6e-249 863.6 447 100.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 3.2e-150 535.8 449 64.8
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.2e-149 533.9 461 62.7
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 8.9e-145 517.7 428 64.0
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.2e-144 517.3 416 63.7
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 1.2e-144 517.3 428 64.3
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 9.9e-144 514.2 437 63.8
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.3e-143 513.8 400 66.0
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 3.2e-142 509.2 437 63.4
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 7.1e-142 508.1 429 62.2
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 2.1e-141 506.5 412 64.1
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 2.7e-141 506.1 416 63.7
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 3.5e-141 505.8 446 59.6
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 7.8e-141 504.6 451 61.4
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 2.3e-140 503.1 427 63.2
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 1.1e-139 500.7 433 61.2
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 5.6e-139 498.4 452 59.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.3e-139 498.0 448 60.0
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.2e-138 497.3 420 63.6
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 3.6e-138 495.7 424 64.2
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 4.0e-137 492.3 434 59.2
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.5e-136 490.3 416 62.5
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 5.8e-136 488.4 464 56.2
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.3e-135 487.3 445 60.0
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 3.8e-135 485.7 446 60.8
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 8.4e-135 484.6 414 62.3
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 9.2e-134 481.1 430 58.8
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.2e-133 480.7 400 63.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.7e-133 479.6 427 60.9
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.7e-132 476.9 440 56.6
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 3.9e-132 475.7 448 58.5
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 6.6e-132 474.9 432 59.0
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 8.7e-132 474.6 425 60.0
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.5e-131 473.8 436 57.6
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.9e-131 473.4 446 57.2
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.5e-131 473.0 457 54.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.3e-131 472.2 446 57.6
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 4.3e-131 472.2 430 58.4
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-130 470.7 399 61.2
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 2.8e-130 469.5 454 57.5
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.6e-130 469.2 446 56.5
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 4.7e-130 468.8 445 56.4
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.4e-129 467.2 425 58.1
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.9e-126 456.8 401 59.6
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 4.2e-126 455.7 449 57.5
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 9.3e-126 454.5 449 57.2
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.2e-125 454.1 451 58.1
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.6e-125 453.8 461 55.7
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.1e-125 453.4 449 57.2
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.1e-125 453.4 449 57.2
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 6.0e-125 451.8 464 56.5
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.3e-124 450.7 444 57.7
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 1.3e-124 450.7 444 57.4
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.6e-124 448.4 415 59.3
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 8.7e-124 448.0 458 54.6
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.5e-123 447.2 460 54.1
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.9e-123 446.8 462 55.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 4.3e-123 445.7 443 56.4
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 9.6e-123 444.5 448 56.5
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 9.6e-123 444.5 415 59.5
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 2.1e-122 443.4 433 57.0
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 4.8e-122 442.2 422 57.3
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 6.2e-122 441.8 446 52.7
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.1e-121 441.0 458 54.6
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.4e-121 440.7 463 52.1
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 1.8e-121 440.3 408 56.4
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.3e-121 438.7 418 57.4
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 3.4e-120 436.0 430 56.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 7.6e-120 434.9 468 53.8
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 9.9e-120 434.5 408 57.8
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.2e-119 433.3 415 57.8
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 4.9e-119 432.2 458 52.2
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 6.4e-119 431.8 439 56.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 5.4e-118 428.7 405 55.3
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 2.1e-117 426.8 457 53.0
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.3e-116 423.3 433 54.3
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 5.1e-116 422.2 447 53.9
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.5e-115 420.6 467 52.9
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 9.6e-115 417.9 446 53.1
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 9.6e-115 417.9 408 56.4
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.6e-114 417.2 462 52.8
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 2.8e-114 416.4 446 53.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 6.2e-114 415.2 355 60.6
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 8.1e-114 414.8 477 50.1
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 8.1e-114 414.8 452 52.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.8e-113 413.7 446 53.1
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 3.1e-113 412.9 435 53.1
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.2e-112 411.0 413 55.2
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.2e-112 411.0 435 52.9
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.5e-112 410.6 354 59.9
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 2.0e-112 410.2 447 52.6
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 2.0e-112 410.2 447 52.6
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.0e-112 410.2 405 56.0
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 4.9e-111 405.6 424 53.5
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-109 401.0 432 53.2
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.5e-109 399.4 432 53.0
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 7.4e-107 391.7 410 53.9
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 9.6e-107 391.3 341 59.8
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 3.7e-106 389.4 419 54.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 9.0e-105 384.8 433 52.2
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 4.6e-101 372.5 361 55.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 4.8e-98 362.5 331 61.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 6.3e-98 362.1 435 50.6
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.3e-95 354.4 389 51.4
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.0e-95 352.4 441 49.4
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 6.5e-87 325.5 350 56.0
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 8.5e-87 325.1 430 45.1
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 9.4e-86 321.6 376 53.5
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.5e-80 303.1 361 50.7
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 4.5e-80 302.8 439 43.5
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 6.5e-79 298.9 265 60.0
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.7e-71 274.2 402 44.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 1.4e-68 264.6 238 57.6
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.2e-66 257.3 472 43.9
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.2e-64 251.5 168 72.6
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 4.2e-62 243.0 291 52.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.4e-57 226.1 405 38.8
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.7e-53 213.0 232 50.9
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 6.8e-52 209.1 422 35.5
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.8e-49 201.1 408 35.8
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 5.9e-48 196.1 437 35.2
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 3.9e-23 113.6 446 28.0
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.6e-21 108.2 121 50.4
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.1e-17 95.5 272 32.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.1e-17 95.5 75 61.3
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.0e-15 87.4 222 33.3
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 3.0e-15 87.4 163 38.0
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 4.0e-12 77.0 420 26.0
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.6e-11 74.3 148 33.8
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 1.1e-09 68.9 81 46.9


User provided reference genes

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