Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.3e-155 550.4 264 100.0
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 3.6e-53 212.6 144 79.9
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.5e-40 169.5 145 66.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 4.6e-40 169.1 146 61.6
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 6.0e-40 168.7 145 66.2
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.3e-39 167.5 144 62.5
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 1.7e-39 167.2 143 65.0
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.0e-39 166.4 145 64.8
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 6.6e-39 165.2 145 64.8
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 2.5e-38 163.3 143 64.3
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.3e-38 162.9 143 62.9
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 5.6e-38 162.2 144 61.8
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 9.6e-38 161.4 171 52.6
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 9.6e-38 161.4 171 52.6
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.3e-37 161.0 144 63.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.3e-37 161.0 143 58.7
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.3e-37 161.0 143 58.7
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.6e-37 160.6 143 61.5
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.6e-37 160.6 145 58.6
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.1e-37 160.2 144 63.9
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 3.6e-37 159.5 145 62.8
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.6e-37 159.5 143 59.4
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 4.8e-37 159.1 143 58.0
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 6.2e-37 158.7 145 59.3
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 6.2e-37 158.7 143 58.7
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 8.1e-37 158.3 144 62.5
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 8.1e-37 158.3 171 52.0
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 8.1e-37 158.3 149 57.7
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.1e-36 157.9 143 61.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.4e-36 157.5 145 62.1
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.4e-36 157.5 145 58.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-36 157.1 145 62.1
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.8e-36 157.1 145 59.3
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.4e-36 156.8 145 61.4
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 2.4e-36 156.8 145 60.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.1e-36 156.4 145 62.1
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 4.0e-36 156.0 145 62.1
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 4.0e-36 156.0 145 62.1
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 4.0e-36 156.0 145 62.1
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 4.0e-36 156.0 141 59.6
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 6.9e-36 155.2 145 61.4
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 6.9e-36 155.2 145 61.4
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 6.9e-36 155.2 143 59.4
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 6.9e-36 155.2 146 57.5
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.9e-36 155.2 145 61.4
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 9.0e-36 154.8 145 57.9
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 9.0e-36 154.8 171 53.8
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.5e-35 154.1 146 58.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.0e-35 153.7 145 57.9
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 2.0e-35 153.7 145 62.1
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.0e-35 153.7 143 58.7
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 2.0e-35 153.7 171 51.5
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.6e-35 153.3 146 58.2
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 3.4e-35 152.9 145 58.6
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.4e-35 152.9 143 59.4
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.4e-35 152.9 147 57.1
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 3.4e-35 152.9 145 60.7
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.5e-35 152.5 145 60.7
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 4.5e-35 152.5 170 52.4
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 4.5e-35 152.5 145 57.9
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 5.8e-35 152.1 145 61.4
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 5.8e-35 152.1 143 60.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.8e-35 152.1 143 60.1
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 7.6e-35 151.8 142 58.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 9.9e-35 151.4 143 60.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 9.9e-35 151.4 141 58.2
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 9.9e-35 151.4 142 57.7
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 9.9e-35 151.4 145 57.2
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.7e-34 150.6 146 56.8
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 1.7e-34 150.6 143 59.4
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.7e-34 150.6 146 57.5
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.2e-34 150.2 188 48.4
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 2.2e-34 150.2 143 56.6
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.2e-34 150.2 145 57.9
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.9e-34 149.8 144 59.0
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.9e-34 149.8 144 59.7
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.9e-34 149.8 142 58.5
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.8e-34 149.4 188 48.4
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 3.8e-34 149.4 142 59.9
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 6.4e-34 148.7 143 56.6
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 6.4e-34 148.7 142 57.7
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.4e-34 148.7 171 53.2
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 6.4e-34 148.7 144 59.0
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 8.4e-34 148.3 145 60.7
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 8.4e-34 148.3 148 58.8
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 8.4e-34 148.3 143 58.0
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 8.4e-34 148.3 144 59.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.1e-33 147.9 147 52.4
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 1.9e-33 147.1 145 55.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.4e-33 146.7 142 57.0
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 2.4e-33 146.7 143 56.6
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 2.4e-33 146.7 147 57.1
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 7.1e-33 145.2 143 55.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 9.3e-33 144.8 144 58.3
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.2e-32 144.4 143 55.9
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 2.1e-32 143.7 144 57.6
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.7e-32 143.3 142 56.3
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 3.5e-32 142.9 148 54.1
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 3.5e-32 142.9 141 54.6
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 7.9e-32 141.7 142 56.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 7.9e-32 141.7 141 54.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.7e-31 140.6 146 54.1
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 3.0e-31 139.8 143 55.2
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 5.1e-31 139.0 174 45.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.1e-31 139.0 145 53.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 2.8e-29 133.3 151 49.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 3.6e-29 132.9 144 51.4
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-28 131.3 152 50.0
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 3.1e-28 129.8 147 49.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.0e-28 129.4 149 49.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 4.0e-28 129.4 151 50.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 4.0e-28 129.4 149 49.0
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.7e-26 124.0 147 50.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.4e-25 120.9 146 46.6
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 1.9e-25 120.6 146 48.6
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 2.1e-24 117.1 149 45.0
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.7e-24 116.7 141 47.5
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 3.0e-23 113.2 110 57.3
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 2.5e-22 110.2 144 45.8
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 8.7e-15 85.1 74 59.5
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 3.8e-10 69.7 119 38.7
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 5.5e-09 65.9 150 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 6.1e-08 62.4 80 42.5
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 1.5e-06 57.8 80 46.2


User provided reference genes

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