Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.5e-310 1068.9 631 100.0
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.9e-60 238.0 622 37.0
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.1e-58 232.3 592 34.0
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.7e-56 224.9 599 33.1
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.0e-53 215.7 622 35.9
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 1.5e-52 211.8 662 30.8
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 6.2e-51 206.5 663 30.2
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.0e-49 201.4 664 30.1
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 6.4e-48 196.4 581 32.4
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.9e-47 194.9 628 29.5
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 7.9e-46 189.5 752 28.6
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 3.9e-45 187.2 642 29.0
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.6e-43 181.8 615 32.8
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 6.2e-43 179.9 659 30.7
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.4e-42 178.7 656 30.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.5e-41 175.3 674 28.9
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 3.4e-41 174.1 611 29.1
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 9.9e-41 172.6 626 29.6
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 6.4e-40 169.9 656 29.3
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-39 169.1 692 28.5
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 2.4e-39 167.9 655 29.5
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.0e-37 162.5 656 29.7
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 8.7e-37 159.5 648 29.5
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.6e-35 155.2 723 25.7
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 8.1e-35 152.9 657 28.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 1.1e-34 152.5 640 27.8
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.8e-34 151.8 625 27.8
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 2.4e-34 151.4 651 27.5
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.1e-34 151.0 657 28.2
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.1e-34 151.0 651 27.2
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.5e-33 148.7 662 27.9
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.1e-31 142.5 654 28.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 3.2e-31 141.0 657 26.5
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 7.1e-31 139.8 652 26.4
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.1e-30 138.3 658 27.8
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 6.0e-30 136.7 655 25.8
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 6.0e-30 136.7 262 38.2
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 2.3e-29 134.8 657 26.5
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 3.9e-29 134.0 657 26.5
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 3.9e-29 134.0 653 26.5
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.9e-28 131.7 664 26.8
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.5e-28 131.3 667 27.4
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 5.3e-26 123.6 690 25.7
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 6.9e-26 123.2 672 25.4
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 9.0e-26 122.9 624 27.1
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-25 122.1 689 25.7
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.6e-25 121.3 641 26.5
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.4e-25 120.9 669 26.9
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 4.5e-25 120.6 643 27.4
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 4.5e-25 120.6 643 27.4
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 7.6e-25 119.8 627 27.4
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 6.5e-24 116.7 696 25.4
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 8.4e-24 116.3 419 30.3
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.4e-23 115.5 643 25.7
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 2.5e-23 114.8 315 34.6
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.2e-23 114.4 666 26.4
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 2.1e-22 111.7 618 24.8
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.7e-22 111.3 626 25.9
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 7.9e-22 109.8 601 26.3
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.8e-21 108.6 664 25.0
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 2.3e-21 108.2 654 24.2
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 8.7e-21 106.3 629 26.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 8.7e-21 106.3 208 35.6
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 8.7e-21 106.3 692 24.0
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.5e-20 105.5 605 25.3
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 4.3e-20 104.0 655 26.6
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 9.7e-20 102.8 236 33.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.2e-19 101.7 672 25.3
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 8.2e-19 99.8 205 47.3
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.8e-18 98.6 666 24.9
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.1e-18 97.8 653 23.7
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 5.3e-18 97.1 680 24.6
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 6.9e-18 96.7 709 23.7
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 9.0e-18 96.3 600 25.8
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.6e-17 94.7 637 24.2
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.7e-16 92.0 665 24.2
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.2e-16 91.7 681 23.9
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.9e-16 91.3 693 22.8
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 3.8e-16 90.9 773 23.4
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.0e-16 90.5 662 24.5
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.1e-15 89.4 712 22.8
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.9e-15 88.6 659 25.3
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 2.5e-15 88.2 324 27.2
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.6e-14 85.5 267 30.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.6e-14 85.5 693 22.7
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.1e-14 85.1 375 26.4
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 1.4e-13 82.4 725 22.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.3e-13 81.6 658 26.3
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.0e-13 81.3 255 30.2
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.5e-12 79.0 666 24.6
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 2.5e-12 78.2 659 24.6
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.3e-12 77.8 116 45.7
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.3e-12 77.8 670 23.3
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 7.4e-12 76.6 631 24.9
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 7.4e-12 76.6 385 26.2
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 9.7e-12 76.3 654 22.5
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-11 74.7 363 26.2
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.8e-11 74.7 363 26.2
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 6.3e-11 73.6 667 23.7
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 8.2e-11 73.2 665 22.9
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.1e-10 70.9 662 22.5
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 6.9e-10 70.1 668 23.5
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 6.9e-10 70.1 661 22.4
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 6.9e-10 70.1 275 30.2
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.2e-09 69.3 648 22.7
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.2e-09 69.3 285 27.7
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 1.0e-08 66.2 676 22.8
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.3e-08 65.9 595 21.8
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.9e-07 62.0 238 28.2
Peaxi162Scf00413g00516 Petunia axillaris HOM05D004923 ORTHO05D005940 2.5e-07 61.6 244 29.1
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.2e-07 61.2 675 22.4
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 5.5e-07 60.5 266 26.3
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.6e-06 58.9 142 33.8
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 2.1e-06 58.5 635 23.8
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.7e-06 58.2 509 23.0


User provided reference genes

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