Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 1.9e-124 449.1 223 100.0
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 3.2e-95 352.1 225 77.8
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 4.4e-92 341.7 224 75.0
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.7e-91 339.7 225 74.7
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 8.2e-91 337.4 225 72.9
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 1.4e-90 336.7 223 73.5
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.8e-90 336.3 225 73.8
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 1.8e-90 336.3 225 73.8
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 4.1e-90 335.1 224 73.2
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 7.0e-90 334.3 219 74.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 1.2e-89 333.6 224 73.2
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.2e-89 333.6 223 71.3
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.6e-89 333.2 220 73.2
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 2.7e-89 332.4 222 71.6
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.7e-89 332.4 225 72.9
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 4.5e-89 331.6 223 71.3
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 4.5e-89 331.6 219 73.5
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 1.3e-88 330.1 222 71.6
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 2.2e-88 329.3 226 72.1
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 8.5e-88 327.4 224 73.2
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.5e-87 326.6 224 71.4
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.2e-87 325.5 223 69.1
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.2e-87 325.1 224 71.4
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 4.2e-87 325.1 224 71.4
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 9.4e-87 323.9 224 71.0
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 1.6e-86 323.2 225 69.3
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.6e-86 323.2 221 72.9
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.1e-86 322.8 224 71.0
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.1e-86 322.8 224 69.6
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 4.7e-86 321.6 224 70.5
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 1.0e-85 320.5 236 69.1
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 1.0e-85 320.5 224 69.6
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 1.0e-85 320.5 224 69.6
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.4e-85 320.1 225 68.9
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.4e-85 320.1 224 68.3
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.3e-85 319.3 224 69.2
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 2.3e-85 319.3 225 68.9
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.0e-85 318.9 224 68.3
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 4.0e-85 318.5 224 67.0
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.0e-85 318.5 224 69.2
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 3.4e-84 315.5 219 69.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.4e-84 315.1 226 70.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.7e-84 314.7 224 67.9
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 5.7e-84 314.7 224 67.9
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 7.5e-84 314.3 225 68.9
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 7.5e-84 314.3 231 65.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 9.8e-84 313.9 226 68.6
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.3e-83 313.5 224 68.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.7e-83 312.0 225 67.1
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 4.8e-83 311.6 225 70.2
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 1.4e-82 310.1 233 65.2
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.4e-82 310.1 233 65.2
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 2.4e-82 309.3 227 64.8
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 2.4e-82 309.3 224 65.6
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 2.4e-82 309.3 233 65.2
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.1e-82 308.5 224 66.5
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 4.1e-82 308.5 224 68.8
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 9.1e-82 307.4 228 66.7
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.2e-81 307.0 226 65.0
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.2e-81 307.0 233 64.4
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.6e-81 306.6 220 69.1
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 2.0e-81 306.2 227 64.8
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 2.0e-81 306.2 227 64.8
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 2.7e-81 305.8 225 65.8
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 3.5e-81 305.4 220 67.3
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 5.9e-81 304.7 220 68.2
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 5.9e-81 304.7 224 67.0
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.0e-80 303.9 220 68.2
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.3e-80 303.5 233 63.5
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.7e-80 303.1 224 67.9
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.7e-80 303.1 224 67.0
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 2.2e-80 302.8 223 65.9
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 2.9e-80 302.4 219 68.5
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 3.8e-80 302.0 233 62.2
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 5.0e-80 301.6 223 65.5
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 5.0e-80 301.6 227 64.3
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 5.0e-80 301.6 227 64.3
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 5.0e-80 301.6 227 64.3
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 6.5e-80 301.2 220 67.7
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 6.5e-80 301.2 219 68.5
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 6.5e-80 301.2 224 67.0
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.9e-79 299.7 217 67.7
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 3.2e-79 298.9 229 65.9
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 4.2e-79 298.5 229 65.9
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 7.2e-79 297.7 222 68.5
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 9.4e-79 297.4 224 65.2
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.2e-78 297.0 251 59.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.6e-78 296.6 228 64.5
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 3.6e-78 295.4 224 65.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.6e-78 295.4 224 65.6
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 1.4e-77 293.5 220 65.0
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.8e-77 293.1 225 64.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 3.0e-77 292.4 224 65.2
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 4.0e-77 292.0 221 65.2
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.7e-75 285.4 323 49.8
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 3.7e-75 285.4 185 73.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.7e-75 285.4 218 66.1
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 4.5e-73 278.5 218 61.5
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 5.0e-72 275.0 218 62.8
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 3.3e-71 272.3 208 61.1
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 4.3e-71 271.9 221 59.7
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 8.9e-69 264.2 208 59.6
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 3.7e-67 258.8 224 58.9
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 8.0e-62 241.1 210 56.2
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.3e-61 239.6 155 72.9
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 6.8e-61 238.0 423 35.9
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 2.0e-52 209.9 216 48.1
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 2.6e-52 209.5 207 47.8
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.2e-46 190.7 148 63.5
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 8.1e-46 188.0 124 74.2
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 4.9e-43 178.7 124 66.1
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 4.1e-42 175.6 117 68.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 3.4e-36 156.0 115 71.3
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 8.4e-35 151.4 116 70.7
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.1e-34 151.0 106 63.2
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.2e-33 147.5 102 62.7
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.6e-33 145.6 99 64.6
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.1e-31 141.0 99 62.6
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 1.8e-29 133.7 134 51.5
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.0e-24 117.9 231 30.3
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 3.4e-20 102.8 82 62.2
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.5e-15 86.7 103 49.5
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 1.6e-14 84.0 86 46.5
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 2.4e-13 80.1 67 55.2
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 3.0e-08 63.2 87 35.6
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 5.1e-08 62.4 77 40.3
TPR.G8238 Trifolium pratense HOM05D002624 ORTHO05D002796 9.6e-07 58.2 47 48.9
AL6G18610 Arabidopsis lyrata HOM05D002624 ORTHO05D002796 1.6e-06 57.4 58 43.1
AT5G08200 Arabidopsis thaliana HOM05D002624 ORTHO05D002796 1.6e-06 57.4 94 35.1
Cre07.g339600 Chlamydomonas reinhardtii HOM05D002624 ORTHO05D002796 1.6e-06 57.4 46 54.3
Ca_03381_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 1.6e-06 57.4 47 48.9
Carub.0006s0710 Capsella rubella HOM05D002624 ORTHO05D002796 2.8e-06 56.6 94 35.1
VMungo0251G0947 Vigna mungo HOM05D002624 ORTHO05D002796 2.8e-06 56.6 47 48.9
CDE04G1266 Ceratophyllum demersum HOM05D002624 ORTHO05D002796 3.7e-06 56.2 68 39.7
CARHR204970 Cardamine hirsuta HOM05D002624 ORTHO05D002796 4.8e-06 55.8 58 41.4
Glyma.20G003100 Glycine max HOM05D002624 ORTHO05D002796 4.8e-06 55.8 47 46.8
Manes.02G220300 Manihot esculenta HOM05D002624 ORTHO05D002796 4.8e-06 55.8 65 41.5
Ca_12980_v3 Cicer arietinum L. HOM05D002624 ORTHO05D002796 6.3e-06 55.5 47 46.8
Potri.012G036600 Populus trichocarpa HOM05D002624 ORTHO05D002796 6.3e-06 55.5 60 43.3
Ah.01g012330 Amaranthus hybridus HOM05D002624 ORTHO05D002796 8.2e-06 55.1 109 32.1
ClCG09G004530 Citrullus lanatus HOM05D002624 ORTHO05D002796 8.2e-06 55.1 71 39.4
Psat6g099320 Pisum sativum HOM05D002624 ORTHO05D002796 8.2e-06 55.1 47 46.8


User provided reference genes

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