Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0003090 Simmondsia chinensis HOM05D007524 ORTHO05D009475 1.0e-190 669.8 331 100.0
AUR62039047 Chenopodium quinoa HOM05D007524 ORTHO05D009475 3.8e-108 395.6 320 63.8
Hma1.2p1_0057F.1_g032020 Hydrangea macrophylla HOM05D007524 ORTHO05D009475 3.8e-100 369.0 341 55.4
TAR628G0034 Trochodendron aralioides HOM05D007524 ORTHO05D009475 5.0e-100 368.6 343 55.4
EL10Ac4g08947 Beta vulgaris HOM05D007524 ORTHO05D009475 4.2e-99 365.5 401 49.6
Duzib248G0930 Durio zibethinus HOM05D007524 ORTHO05D009475 9.7e-96 354.4 334 51.8
Gorai.013G099200 Gossypium raimondii HOM05D007524 ORTHO05D009475 3.7e-95 352.4 339 52.8
Gohir.A13G091600 Gossypium hirsutum HOM05D007524 ORTHO05D009475 8.2e-95 351.3 340 52.4
Thecc.02G312000 Theobroma cacao HOM05D007524 ORTHO05D009475 1.1e-94 350.9 340 51.2
GSVIVG01022414001 Vitis vinifera HOM05D007524 ORTHO05D009475 2.4e-94 349.7 328 54.3
Dinv25593 Davidia involucrata HOM05D007524 ORTHO05D009475 3.1e-94 349.4 329 54.7
Actinidia07457 Actinidia chinensis HOM05D007524 ORTHO05D009475 1.0e-92 344.4 336 52.4
Solyc01g008520.3 Solanum lycopersicum HOM05D007524 ORTHO05D009475 1.7e-92 343.6 337 53.1
Sopen01g004060 Solanum pennellii HOM05D007524 ORTHO05D009475 5.0e-92 342.0 337 52.5
MD16G1006200 Malus domestica HOM05D007524 ORTHO05D009475 5.1e-89 332.0 333 49.8
PSO017G6978 Papaver somniferum HOM05D007524 ORTHO05D009475 6.7e-89 331.6 336 52.7
Atru.chr11.1209 Acer truncatum HOM05D007524 ORTHO05D009475 2.5e-88 329.7 359 51.5
RcHm_v2.0_Chr4g0446351 Rosa chinensis HOM05D007524 ORTHO05D009475 4.3e-88 328.9 335 51.6
Rhsim08G0000700 Rhododendron simsii HOM05D007524 ORTHO05D009475 7.4e-88 328.2 325 54.2
Migut.C01263 Erythranthe guttata HOM05D007524 ORTHO05D009475 2.2e-87 326.6 324 51.9
Hund06881 Selenicereus undatus HOM05D007524 ORTHO05D009475 2.2e-87 326.6 328 53.4
Eucgr.J00844 Eucalyptus grandis HOM05D007524 ORTHO05D009475 2.8e-87 326.2 342 49.7
Peaxi162Scf00032g00619 Petunia axillaris HOM05D007524 ORTHO05D009475 6.3e-87 325.1 340 51.2
BcaB04g19971 Brassica carinata HOM05D007524 ORTHO05D009475 8.2e-87 324.7 340 50.6
MELO3C020032.2 Cucumis melo HOM05D007524 ORTHO05D009475 1.1e-86 324.3 329 51.1
Lj3g0014826 Lotus japonicus HOM05D007524 ORTHO05D009475 4.1e-86 322.4 335 51.0
CsaV3_5G013190 Cucumis sativus L. HOM05D007524 ORTHO05D009475 1.5e-85 320.5 324 52.2
Sed0011089 Sechium edule HOM05D007524 ORTHO05D009475 2.6e-85 319.7 327 50.8
AL8G41910 Arabidopsis lyrata HOM05D007524 ORTHO05D009475 7.7e-85 318.2 348 50.0
Prupe.1G344400 Prunus persica HOM05D007524 ORTHO05D009475 1.0e-84 317.8 320 51.9
Gohir.D13G086900 Gossypium hirsutum HOM05D007524 ORTHO05D009475 1.7e-84 317.0 295 54.9
PGR119G1695 Punica granatum HOM05D007524 ORTHO05D009475 1.7e-84 317.0 327 50.5
Sp2g27600 Schrenkiella parvula HOM05D007524 ORTHO05D009475 1.7e-84 317.0 344 49.7
Carub.0008s2532 Capsella rubella HOM05D007524 ORTHO05D009475 8.5e-84 314.7 343 48.4
THA.LOC104818453 Tarenaya hassleriana HOM05D007524 ORTHO05D009475 1.9e-83 313.5 340 49.7
BcaC04g23318 Brassica carinata HOM05D007524 ORTHO05D009475 3.2e-83 312.8 339 50.4
FAN07G0447 Fragaria x ananassa HOM05D007524 ORTHO05D009475 3.2e-83 312.8 328 50.6
A09p08680 Brassica napus HOM05D007524 ORTHO05D009475 4.2e-83 312.4 331 50.8
Medtr4g074200 Medicago truncatula HOM05D007524 ORTHO05D009475 7.2e-83 311.6 335 48.4
Aa31LG1G17400 Aethionema arabicum HOM05D007524 ORTHO05D009475 1.2e-82 310.8 333 48.0
Haze_11736 Corylus avellana HOM05D007524 ORTHO05D009475 1.2e-82 310.8 382 44.8
Thhalv10005594m.g Eutrema salsugineum HOM05D007524 ORTHO05D009475 1.6e-82 310.5 322 50.0
Manes.03G082500 Manihot esculenta HOM05D007524 ORTHO05D009475 1.6e-82 310.5 332 48.5
TPR.G21554 Trifolium pratense HOM05D007524 ORTHO05D009475 1.6e-82 310.5 335 49.3
Cc00_g05860 Coffea canephora HOM05D007524 ORTHO05D009475 1.4e-81 307.4 331 47.4
BraA09t36516Z Brassica rapa HOM05D007524 ORTHO05D009475 2.3e-81 306.6 335 50.1
CARHR278490 Cardamine hirsuta HOM05D007524 ORTHO05D009475 2.3e-81 306.6 343 48.1
arahy.Tifrunner.gnm1.ann1.NAL0L4 Arachis hypogaea HOM05D007524 ORTHO05D009475 3.0e-81 306.2 326 49.1
C09p09780 Brassica napus HOM05D007524 ORTHO05D009475 3.9e-81 305.8 331 50.5
Aqoxy5G02489 Aquilegia oxysepala HOM05D007524 ORTHO05D009475 6.7e-81 305.1 333 49.2
FvH4_4g36590 Fragaria vesca HOM05D007524 ORTHO05D009475 6.7e-81 305.1 331 49.2
FAN17G0147 Fragaria x ananassa HOM05D007524 ORTHO05D009475 7.4e-80 301.6 323 50.2
Glyma.11G104200 Glycine max HOM05D007524 ORTHO05D009475 7.4e-80 301.6 329 50.2
arahy.Tifrunner.gnm1.ann1.SSM27G Arachis hypogaea HOM05D007524 ORTHO05D009475 1.7e-79 300.4 318 49.7
BolC9t53889H Brassica oleracea HOM05D007524 ORTHO05D009475 2.2e-79 300.1 335 49.9
AT5G64520 Arabidopsis thaliana HOM05D007524 ORTHO05D009475 2.8e-79 299.7 342 48.0
Nitab4.5_0000825g0060 Nicotiana tabacum HOM05D007524 ORTHO05D009475 1.6e-77 293.9 337 48.7
Nitab4.5_0001747g0050 Nicotiana tabacum HOM05D007524 ORTHO05D009475 1.6e-77 293.9 334 49.4
SGA_v2.0_scaffold118G32494 Striga asiatica HOM05D007524 ORTHO05D009475 2.6e-77 293.1 355 45.9
Glyma.12G029200 Glycine max HOM05D007524 ORTHO05D009475 1.7e-76 290.4 329 48.3
ECA247G1633 Erigeron canadensis HOM05D007524 ORTHO05D009475 8.5e-76 288.1 330 49.7
Lalb_Chr19g0139281 Lupinus albus HOM05D007524 ORTHO05D009475 1.1e-75 287.7 336 48.2
AUR62004790 Chenopodium quinoa HOM05D007524 ORTHO05D009475 1.5e-75 287.3 325 49.5
VMungo1127G1744 Vigna mungo HOM05D007524 ORTHO05D009475 1.5e-75 287.3 323 48.6
FAN12G0445 Fragaria x ananassa HOM05D007524 ORTHO05D009475 1.9e-75 287.0 286 51.7
PSO063G3654 Papaver somniferum HOM05D007524 ORTHO05D009475 1.9e-75 287.0 279 55.2
Oeu032986.1 Olea europaea HOM05D007524 ORTHO05D009475 4.7e-74 282.3 274 53.6
Psat7g173160 Pisum sativum HOM05D007524 ORTHO05D009475 6.1e-74 282.0 314 48.1
Lsat_1_v5_gn_1_28521 Lactuca sativa HOM05D007524 ORTHO05D009475 1.8e-73 280.4 326 46.6
Zm00001eb146450 Zea mays HOM05D007524 ORTHO05D009475 3.1e-70 269.6 340 43.2
ATR0584G209 Amborella trichopoda HOM05D007524 ORTHO05D009475 2.7e-69 266.5 282 52.1
HanXRQChr04g0100921 Helianthus annuus HOM05D007524 ORTHO05D009475 2.9e-68 263.1 328 46.0
vmacro18683 Vaccinium macrocarpon HOM05D007524 ORTHO05D009475 8.5e-68 261.5 275 53.5
unitig_46.g18111 Utricularia gibba HOM05D007524 ORTHO05D009475 1.6e-66 257.3 324 43.5
CANSAT11G0990 Cannabis sativa HOM05D007524 ORTHO05D009475 2.8e-63 246.5 253 51.8
Phvul.011G032400 Phaseolus vulgaris HOM05D007524 ORTHO05D009475 1.5e-59 234.2 233 52.8
Mapoly0070s0006 Marchantia polymorpha HOM05D007524 ORTHO05D009475 3.6e-58 229.6 344 38.7
Ca_03043_v3 Cicer arietinum L. HOM05D007524 ORTHO05D009475 6.1e-58 228.8 216 53.2
CiPaw.06G059700 Carya illinoinensis HOM05D007524 ORTHO05D009475 8.6e-52 208.4 214 50.5
DCAR_013072 Daucus carota HOM05D007524 ORTHO05D009475 1.5e-51 207.6 329 38.0
Nn5g27870 Nelumbo nucifera HOM05D007524 ORTHO05D009475 4.3e-51 206.1 202 51.0
AagrBONN_evm.TU.Sc2ySwM_368.2219 Anthoceros agrestis HOM05D007524 ORTHO05D009475 4.4e-48 196.1 312 37.8
SMO367G0885 Selaginella moellendorffii HOM05D007524 ORTHO05D009475 3.1e-41 173.3 343 34.4
Pp3c1_6220 Physcomitrium patens HOM05D007524 ORTHO05D009475 1.0e-36 158.3 342 33.3
PGSC0003DMG401031484 Solanum tuberosum HOM05D007524 ORTHO05D009475 2.8e-34 150.2 109 67.9
Nn5g27871 Nelumbo nucifera HOM05D007524 ORTHO05D009475 4.7e-34 149.4 128 59.4
PGSC0003DMG400019097 Solanum tuberosum HOM05D007524 ORTHO05D009475 4.7e-34 149.4 109 66.1
CAN.G821.7 Capsicum annuum HOM05D007524 ORTHO05D009475 1.3e-31 141.4 113 61.9
COL.COLO4_27673 Corchorus olitorius HOM05D007524 ORTHO05D009475 4.1e-30 136.3 158 44.9
Cpa.g.sc63.24 Carica papaya HOM05D007524 ORTHO05D009475 4.6e-29 132.9 98 64.3
ClCG11G001140 Citrullus lanatus HOM05D007524 ORTHO05D009475 4.6e-29 132.9 105 61.0
PGSC0003DMG400010497 Solanum tuberosum HOM05D007524 ORTHO05D009475 1.9e-27 127.5 148 49.3
CBR_g6685 Chara braunii HOM05D007524 ORTHO05D009475 8.9e-17 92.0 147 36.7
Ah.06g191680 Amaranthus hybridus HOM05D007524 ORTHO05D009475 4.4e-16 89.7 59 72.9
MCO09G042 Micromonas commoda HOM05D007524 ORTHO05D009475 4.9e-15 86.3 385 25.5
PRCOL_00006630 Prasinoderma coloniale HOM05D007524 ORTHO05D009475 9.0e-09 65.5 197 25.4
PGSC0003DMG401010496 Solanum tuberosum HOM05D007524 ORTHO05D009475 1.5e-08 64.7 75 41.3
ClCG11G001150 Citrullus lanatus HOM05D007524 ORTHO05D009475 8.4e-07 58.9 96 36.5


User provided reference genes

Program Settings