Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 2654.0 1360 100.0
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1539.2 1392 59.3
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1504.2 1371 59.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1494.2 1360 59.1
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1458.7 1359 57.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1437.9 1366 57.5
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1436.8 1366 57.3
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1435.6 1366 57.2
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1434.1 1347 57.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1433.7 1366 57.2
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1430.2 1357 56.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1425.6 1390 56.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1419.8 1360 56.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1410.2 1410 55.5
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1409.0 1378 55.4
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1409.0 1379 56.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1402.9 1325 58.2
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1402.1 1355 56.5
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1336 57.6
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1399.8 1360 56.2
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1397.5 1395 54.9
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1391.7 1399 55.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1391.7 1376 55.4
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1389.8 1362 56.4
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1373.2 1367 56.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1358.2 1359 55.4
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1353.6 1378 54.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1350.1 1382 54.9
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1347.0 1340 55.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1340.5 1368 53.9
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1338.6 1381 53.1
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1329.3 1376 53.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1328.9 1369 53.1
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1327.8 1384 54.0
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1320.4 1376 52.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1313.5 1393 53.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1308.5 1378 52.8
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1306.6 1352 54.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1301.2 1415 51.7
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1299.3 1354 53.0
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1296.6 1397 52.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1296.2 1380 52.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1290.4 1362 53.7
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1289.2 1369 52.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1286.6 1334 53.7
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1284.6 1474 50.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1282.3 1362 52.6
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1378 53.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1375 52.4
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1279.2 1388 51.9
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1278.1 1208 56.5
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1277.7 1369 52.9
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1276.5 1412 50.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1275.8 1368 52.3
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1275.4 1362 52.2
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1272.3 1367 52.2
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1270.0 1375 52.1
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1268.1 1365 52.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1264.2 1375 51.7
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1263.8 1370 52.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1261.5 1357 51.5
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1251.9 1429 51.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1247.3 1385 51.5
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1238.8 1363 51.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1237.6 1354 52.1
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1233.0 1354 51.6
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1232.6 1356 52.0
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1232.6 1475 49.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1224.2 1354 51.4
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1218.0 1354 51.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1210.3 1374 48.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1180.2 1388 49.6
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1176.0 1561 45.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1168.3 1364 49.1
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1133.2 1137 55.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1110.1 1367 48.0
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1109.0 1589 43.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1076.6 1351 44.5
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 7.3e-291 1004.6 981 55.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.2e-289 998.4 1131 49.7
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 1.7e-287 993.4 1157 48.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.8e-281 973.4 1008 54.7
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 8.1e-274 948.0 1053 50.1
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.3e-259 899.4 1052 49.9
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.0e-243 847.0 843 56.1
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 3.1e-233 813.1 1355 40.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.1e-227 794.7 832 53.1
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 7.0e-217 758.8 726 55.4
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.6e-216 757.7 745 54.6
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.7e-207 727.6 831 49.3
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.0e-188 663.3 1358 36.0
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.6e-181 640.2 1423 33.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.3e-175 620.9 1436 32.3
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.9e-154 550.8 584 54.1
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.5e-150 538.5 514 55.3
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 6.9e-140 503.1 524 52.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.0e-139 501.5 529 52.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.2e-138 498.0 665 42.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.9e-134 485.0 437 57.7
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.3e-134 484.2 443 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.8e-132 478.4 1016 33.7
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 3.3e-110 404.4 333 60.7
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 9.1e-108 396.4 398 54.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.4e-92 345.9 472 40.0
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.3e-87 328.6 753 35.1
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 2.8e-80 305.1 581 37.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.0e-80 303.5 469 41.6
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.3e-77 296.2 267 58.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.9e-77 295.0 352 48.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.0e-67 260.8 366 43.4
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 7.8e-67 260.4 445 38.2
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.7e-58 230.3 356 42.4
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.1e-56 223.8 158 69.6
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.1e-52 213.4 138 76.1
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.1e-52 210.7 237 52.7
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.3e-49 201.8 406 37.9
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.1e-47 196.8 172 60.5
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 4.5e-46 191.4 212 51.9
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 7.6e-46 190.7 245 39.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.8e-45 188.3 176 60.2
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-42 179.5 140 62.1
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 7.4e-41 174.1 226 46.5
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.7e-40 171.8 672 25.4
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.0e-39 168.3 257 35.8
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.7e-37 162.9 1041 22.7
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 6.4e-37 161.0 140 55.7
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.4e-37 161.0 179 46.4
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 4.5e-30 138.3 1212 23.3
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 5.8e-30 137.9 192 46.9
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 7.6e-30 137.5 133 53.4
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 6.5e-29 134.4 158 50.0
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.7e-27 129.0 138 44.9
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.0e-26 125.6 404 29.0
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 2.5e-25 122.5 96 60.4
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.3e-23 114.8 96 59.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.6e-22 110.9 166 41.0
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.9e-20 106.3 91 57.1
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 6.1e-19 101.3 164 40.9
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.0e-18 100.5 107 52.3
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.5e-17 95.9 98 50.0
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.4e-17 94.4 276 33.7
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 9.7e-17 94.0 501 26.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.3e-16 93.6 91 56.0
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.7e-16 93.2 154 41.6
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.1e-15 90.5 100 42.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 5.3e-15 88.2 62 71.0
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 7.7e-14 84.3 61 62.3
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.8e-13 82.0 114 40.4
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.1e-12 80.5 98 36.7
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 4.2e-12 78.6 98 43.9
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.1e-11 76.3 73 56.2
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.9e-11 74.3 142 36.6
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.3e-09 68.9 137 36.5
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 3.3e-09 68.9 98 39.8
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.3e-08 67.0 151 33.1
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 1.3e-08 67.0 98 39.8
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.2e-08 66.2 146 39.7
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 4.8e-08 65.1 96 45.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 4.8e-08 65.1 65 58.5
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 6.3e-08 64.7 140 39.3
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.1e-07 63.9 96 44.8
Sc07g0006880 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.1e-07 63.9 168 33.9
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 9.1e-07 60.8 47 68.1
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 9.1e-07 60.8 52 55.8


User provided reference genes

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