Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.4e-116 422.9 207 100.0
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 5.7e-86 321.2 207 73.9
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.9e-82 308.9 203 72.4
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 3.8e-82 308.5 192 74.5
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.4e-81 306.6 192 74.5
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.6e-80 303.1 193 73.6
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.7e-80 302.4 187 74.9
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.7e-80 302.4 187 74.9
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 4.7e-80 301.6 221 67.9
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 4.7e-80 301.6 190 75.8
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 1.4e-79 300.1 191 71.2
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.8e-79 299.7 194 73.2
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 2.3e-79 299.3 192 72.4
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.0e-79 298.9 191 73.8
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 2.6e-78 295.8 189 72.5
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 5.7e-78 294.7 193 71.5
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 7.4e-78 294.3 205 68.8
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 9.7e-78 293.9 191 71.2
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.7e-77 293.1 171 77.2
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 2.2e-77 292.7 179 76.5
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 3.7e-77 292.0 195 69.7
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 4.8e-77 291.6 186 73.1
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.8e-77 291.6 197 69.5
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 6.3e-77 291.2 205 68.3
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 8.2e-77 290.8 197 70.1
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.4e-76 290.0 205 67.3
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.8e-76 289.7 199 67.3
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.1e-76 288.9 205 68.8
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 4.1e-76 288.5 194 67.5
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 4.1e-76 288.5 196 67.9
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 4.1e-76 288.5 196 67.9
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 4.1e-76 288.5 176 75.6
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 5.3e-76 288.1 177 75.7
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 5.3e-76 288.1 199 68.3
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 9.1e-76 287.3 198 68.7
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.2e-75 287.0 182 72.0
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.2e-75 287.0 196 67.9
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 2.0e-75 286.2 199 67.3
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.6e-75 285.8 201 65.7
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 4.5e-75 285.0 193 68.4
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 4.5e-75 285.0 199 67.8
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 4.5e-75 285.0 190 68.9
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 4.5e-75 285.0 195 67.7
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 5.9e-75 284.6 207 66.2
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 1.3e-74 283.5 188 70.2
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 1.3e-74 283.5 188 70.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.3e-74 283.5 192 69.3
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.7e-74 283.1 194 67.5
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.7e-74 283.1 171 75.4
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.9e-74 282.3 195 68.2
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 3.8e-74 282.0 190 69.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 5.0e-74 281.6 194 67.0
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 6.5e-74 281.2 187 70.1
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 8.5e-74 280.8 174 73.6
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.1e-73 280.4 190 67.9
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-73 280.4 165 77.0
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-73 280.0 194 68.6
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.5e-73 279.3 195 69.7
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.2e-73 278.9 205 65.9
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 5.5e-73 278.1 197 69.5
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 1.2e-72 276.9 175 74.3
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.2e-72 276.9 195 67.7
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.6e-72 276.6 190 69.5
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.6e-72 276.6 205 65.4
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.7e-72 275.8 189 69.8
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 2.7e-72 275.8 200 66.5
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.6e-72 275.4 171 73.7
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.7e-72 275.0 203 64.0
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.7e-72 275.0 198 68.2
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 6.1e-72 274.6 190 69.5
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 6.1e-72 274.6 192 68.8
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 6.1e-72 274.6 169 74.0
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.0e-71 273.9 191 67.0
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.4e-71 273.5 189 68.3
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.8e-71 273.1 194 64.4
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.0e-71 272.3 165 75.2
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 3.0e-71 272.3 200 66.5
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 5.2e-71 271.6 196 66.3
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 8.8e-71 270.8 170 72.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.1e-70 270.4 169 71.6
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.1e-70 270.4 207 62.3
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.1e-70 270.4 199 65.3
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.4e-70 268.5 197 64.5
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 4.4e-70 268.5 176 68.8
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.7e-70 268.1 166 72.9
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 7.4e-70 267.7 198 67.2
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.7e-69 265.4 197 63.5
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 3.7e-69 265.4 198 62.6
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.7e-69 265.4 203 62.6
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 6.3e-69 264.6 197 63.5
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 6.3e-69 264.6 195 64.1
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 8.2e-69 264.2 193 62.2
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 8.2e-69 264.2 209 62.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 3.1e-68 262.3 194 62.9
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.0e-67 259.6 167 68.3
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 8.5e-66 254.2 209 58.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 8.5e-66 254.2 209 58.9
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 8.5e-66 254.2 170 70.6
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.1e-65 253.8 187 62.6
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 1.5e-65 253.4 173 68.2
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 1.5e-65 253.4 154 77.3
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.5e-65 252.7 147 77.6
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 3.2e-65 252.3 173 69.4
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 7.2e-65 251.1 177 66.7
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.6e-64 250.0 193 61.7
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 6.7e-63 244.6 186 65.1
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 5.7e-62 241.5 178 64.0
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 7.5e-62 241.1 199 62.8
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 1.7e-61 240.0 196 58.2
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 4.1e-60 235.3 197 58.4
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 2.0e-59 233.0 166 62.0
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 3.8e-58 228.8 284 44.7
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.0e-58 228.4 196 56.6
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.1e-57 227.3 196 55.6
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.1e-57 227.3 196 55.6
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 3.2e-57 225.7 196 55.6
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.2e-54 217.2 129 75.2
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 6.3e-53 211.5 160 68.8
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.2e-51 207.2 173 56.1
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.2e-51 207.2 158 65.2
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 4.5e-51 205.3 168 53.6
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 6.5e-50 201.4 165 55.8
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 1.5e-49 200.3 157 63.7
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 5.7e-46 188.3 146 63.0
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.5e-41 173.7 165 49.7
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 4.4e-38 162.2 165 53.3
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.9e-36 156.8 193 46.1
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 2.7e-35 152.9 198 41.9
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.6e-32 143.7 168 41.1
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.7e-32 142.1 154 46.8
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.4e-30 135.6 192 40.6
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 5.4e-28 128.6 79 72.2
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 5.4e-28 128.6 167 43.1
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 6.2e-24 115.2 194 31.4
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.7e-19 99.8 64 60.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.4e-15 87.4 177 31.6
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 4.0e-15 85.9 62 59.7
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.7e-11 73.2 72 51.4
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.0e-10 71.2 69 52.2
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 5.6e-09 65.5 45 68.9


User provided reference genes

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