Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 0.0e+00 1172.9 624 100.0
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 1.5e-86 324.7 679 38.3
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.9e-84 317.8 766 35.9
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.9e-82 310.1 683 37.8
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.8e-80 303.9 645 39.4
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 9.1e-79 298.9 700 38.3
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.0e-78 297.7 593 40.3
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.6e-78 297.4 735 33.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 3.5e-78 297.0 654 37.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 1.3e-77 295.0 702 37.3
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 2.9e-77 293.9 578 41.7
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.8e-77 293.5 709 37.8
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.5e-76 291.6 591 38.1
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.2e-76 290.0 607 39.4
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 1.6e-75 288.1 581 40.1
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 2.1e-75 287.7 718 35.8
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 6.1e-75 286.2 731 36.0
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 8.0e-75 285.8 538 41.6
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 1.4e-74 285.0 525 41.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.0e-73 281.2 576 40.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 3.3e-73 280.4 687 39.3
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.2e-72 277.7 696 36.6
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 4.8e-72 276.6 630 37.9
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.8e-71 274.6 707 35.9
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 9.1e-71 272.3 710 36.2
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.2e-70 271.9 717 34.9
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.3e-69 268.5 688 34.7
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 2.2e-69 267.7 674 34.3
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 6.5e-69 266.2 707 35.4
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 1.1e-68 265.4 592 40.7
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 1.2e-67 261.9 713 35.1
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.2e-67 261.9 709 35.7
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.6e-67 260.4 685 35.6
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.7e-67 260.0 600 37.5
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.8e-66 258.1 678 37.3
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 5.2e-66 256.5 675 32.9
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 6.8e-66 256.1 629 36.1
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.2e-65 255.4 699 36.5
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.5e-65 255.0 534 39.7
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.0e-65 254.6 751 32.1
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 2.0e-65 254.6 747 33.7
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 7.5e-65 252.7 678 33.5
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 9.8e-65 252.3 752 32.3
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 1.3e-64 251.9 530 39.1
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.7e-64 250.4 665 34.4
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 9.1e-63 245.7 671 35.2
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.5e-62 243.8 619 35.4
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.0e-61 242.3 695 33.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 8.5e-61 239.2 451 41.7
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 1.5e-60 238.4 666 34.4
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.9e-60 238.0 703 33.9
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 3.2e-60 237.3 680 33.5
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.2e-60 236.9 689 33.2
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 4.2e-60 236.9 688 34.7
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 9.4e-60 235.7 635 34.3
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.2e-59 235.3 690 33.5
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.1e-59 234.6 667 34.3
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.4e-58 231.9 702 33.0
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.2e-57 228.8 538 38.1
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.0e-57 228.0 751 32.0
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.0e-57 228.0 559 35.1
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.0e-57 228.0 770 32.5
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.0e-57 228.0 583 36.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 5.7e-57 226.5 633 35.5
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 5.4e-55 219.9 664 32.5
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 7.0e-55 219.5 414 43.2
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.6e-54 218.4 565 35.8
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.6e-54 218.4 671 33.1
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 2.0e-54 218.0 588 36.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.5e-54 216.9 666 33.2
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.5e-54 216.9 641 34.3
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 3.8e-53 213.8 835 29.6
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 6.6e-53 213.0 431 40.1
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.9e-52 211.5 661 32.1
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 4.3e-52 210.3 673 31.9
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 9.5e-52 209.1 296 51.0
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.1e-51 208.0 635 33.1
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.3e-50 204.5 655 31.9
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.5e-49 201.8 636 31.9
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 6.4e-48 196.4 479 36.5
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.8e-47 194.9 539 35.8
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.7e-45 188.3 562 33.3
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 6.6e-45 186.4 515 35.9
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 3.6e-43 180.6 525 35.8
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 4.7e-43 180.3 327 42.2
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.0e-42 179.1 477 34.6
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.0e-42 179.1 480 33.8
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 2.6e-41 174.5 619 30.0
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 3.4e-41 174.1 518 35.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.7e-40 170.6 638 31.2
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 2.4e-39 167.9 529 32.5
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 4.1e-39 167.2 536 33.2
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-38 164.9 624 29.8
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.0e-38 164.9 624 29.8
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 6.0e-38 163.3 317 42.3
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.0e-37 162.5 536 31.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 2.3e-37 161.4 628 29.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 6.6e-37 159.8 624 29.3
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 6.6e-37 159.8 538 31.0
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 8.6e-37 159.5 521 31.3
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 7.3e-36 156.4 535 29.2
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.1e-35 154.8 606 29.4
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.1e-35 154.8 557 30.3
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 3.6e-35 154.1 548 30.7
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.1e-34 152.5 598 29.3
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 4.0e-34 150.6 504 31.7
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 2.0e-33 148.3 551 31.2
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 1.7e-32 145.2 327 37.0
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.9e-31 141.7 552 30.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 7.1e-31 139.8 287 41.1
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.0e-29 136.0 334 32.0
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 5.1e-29 133.7 493 31.0
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 2.2e-24 118.2 287 37.6
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 4.1e-23 114.0 456 31.4
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.6e-22 110.5 366 32.8
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 7.8e-22 109.8 295 34.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 8.6e-21 106.3 489 29.4
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.8e-19 101.3 367 30.8
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.1e-18 99.4 210 42.4
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 6.8e-18 96.7 528 27.5
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.4e-17 94.0 172 41.9
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 3.0e-13 81.3 393 28.0
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 6.2e-11 73.6 282 31.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.4e-10 72.4 282 31.6
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.4e-10 72.4 370 28.1
Pp3c3_36380 Physcomitrium patens HOM05D027944 ORTHO05D019295 3.5e-06 57.8 75 44.0


User provided reference genes

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