Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 0.0e+00 2202.6 1398 100.0
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 4.4e-291 1005.4 1487 47.9
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.2e-213 747.3 1410 40.8
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 1.6e-211 741.1 1462 39.6
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 7.5e-206 722.2 1522 38.2
AUR62035493 Chenopodium quinoa HOM05D003470 ORTHO05D004157 4.2e-201 706.4 1349 39.6
Sabra08G0020000 Salix brachista HOM05D003470 ORTHO05D004157 1.5e-198 698.0 1496 40.2
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 1.7e-194 684.5 1417 39.7
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 6.5e-194 682.6 1418 39.7
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 8.5e-194 682.2 1462 38.1
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 2.5e-193 680.6 1525 38.7
COL.COLO4_32876 Corchorus olitorius HOM05D003470 ORTHO05D004157 1.9e-185 654.4 1452 39.7
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 4.7e-184 649.8 1402 35.2
Potri.008G029800 Populus trichocarpa HOM05D003470 ORTHO05D004157 6.4e-181 639.4 1439 40.4
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 1.8e-180 637.9 1474 36.1
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 4.1e-180 636.7 1446 38.3
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 8.9e-175 619.0 1495 37.2
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 4.4e-174 616.7 1404 34.8
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 5.4e-172 609.8 1454 36.7
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 1.7e-170 604.7 1392 40.5
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 1.1e-169 602.1 1471 37.2
CSS0002390 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 6.8e-167 592.8 1475 36.2
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 1.4e-159 568.5 1459 36.1
DCAR_006389 Daucus carota HOM05D003470 ORTHO05D004157 1.0e-146 525.8 1398 33.8
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 1.3e-144 518.8 1282 39.9
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 4.5e-142 510.4 1432 35.8
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 7.6e-142 509.6 1722 31.4
GSVIVG01016161001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.2e-139 502.3 1389 37.3
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 3.5e-139 500.7 1443 34.2
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 9.9e-134 482.6 1454 32.5
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 2.4e-132 478.0 1450 31.0
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 5.6e-129 466.8 1414 32.8
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 9.6e-129 466.1 1309 35.5
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 2.8e-128 464.5 1414 33.5
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 1.2e-126 459.1 1449 32.6
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 1.1e-124 452.6 1431 33.1
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 9.7e-121 439.5 1429 32.5
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 1.6e-120 438.7 1403 31.8
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 6.5e-117 426.8 1455 31.1
ECA238G1102 Erigeron canadensis HOM05D003470 ORTHO05D004157 1.6e-115 422.2 1383 31.7
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 1.6e-115 422.2 1390 32.4
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 2.7e-115 421.4 1426 32.7
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 4.6e-115 420.6 1394 30.5
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 2.4e-111 408.3 1401 31.2
Zm00001eb404310 Zea mays HOM05D003470 ORTHO05D004157 4.5e-110 404.1 1386 29.9
vmacro07200 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 2.9e-109 401.4 1504 31.7
PGR142G1299 Punica granatum HOM05D003470 ORTHO05D004157 1.9e-108 398.7 1394 30.7
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 7.2e-108 396.7 1463 31.6
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 6.7e-106 390.2 1399 29.8
TAR369G0117 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.1e-105 389.4 555 49.2
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 2.2e-104 385.2 1463 31.4
ECA233G4972 Erigeron canadensis HOM05D003470 ORTHO05D004157 3.7e-104 384.4 1406 33.4
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 6.3e-104 383.6 1502 30.1
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 2.4e-103 381.7 1504 30.8
HanXRQChr14g0456131 Helianthus annuus HOM05D003470 ORTHO05D004157 4.1e-103 380.9 1388 31.9
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 4.5e-102 377.5 1391 29.0
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 7.7e-102 376.7 1404 30.8
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.3e-101 375.9 1446 31.7
TWI38G0957 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 1.2e-99 369.4 865 33.6
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 8.8e-98 363.2 1365 28.6
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 2.6e-97 361.7 1420 30.6
Lsat_1_v5_gn_2_103301 Lactuca sativa HOM05D003470 ORTHO05D004157 1.7e-96 359.0 1375 29.1
Eucgr.G02735 Eucalyptus grandis HOM05D003470 ORTHO05D004157 6.3e-96 357.1 1296 29.2
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 2.4e-95 355.1 1427 30.1
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 1.6e-94 352.4 1451 31.4
Zm00001eb000590 Zea mays HOM05D003470 ORTHO05D004157 1.0e-93 349.7 1377 30.3
TAR369G0811 Trochodendron aralioides HOM05D003470 ORTHO05D004157 5.0e-93 347.4 919 34.1
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 5.5e-92 344.0 1369 28.8
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 1.0e-90 339.7 1457 29.6
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 5.2e-90 337.4 1465 28.9
Sopen11g003760 Solanum pennellii HOM05D003470 ORTHO05D004157 3.3e-89 334.7 1408 26.8
Glyma.10G198700 Glycine max HOM05D003470 ORTHO05D004157 1.3e-88 332.8 1286 28.1
Atru.chr12.917 Acer truncatum HOM05D003470 ORTHO05D004157 2.8e-88 331.6 573 43.3
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 3.1e-87 328.2 1365 27.0
VMungo0720G1037 Vigna mungo HOM05D003470 ORTHO05D004157 3.1e-87 328.2 1374 27.9
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 4.5e-86 324.3 1363 27.4
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 2.9e-85 321.6 1635 26.2
HanXRQChr08g0218281 Helianthus annuus HOM05D003470 ORTHO05D004157 8.5e-85 320.1 1379 28.9
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 4.2e-84 317.8 1509 28.2
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 9.4e-84 316.6 1436 26.0
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 6.1e-83 313.9 1229 29.5
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 8.0e-83 313.5 1372 27.3
Solyc11g007900.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 2.0e-81 308.9 1373 26.7
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 6.3e-80 303.9 1442 27.6
Ca_10457_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 2.4e-79 302.0 1308 26.4
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 5.4e-79 300.8 1320 29.9
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 9.1e-79 300.1 1344 27.8
Psat6g173600 Pisum sativum HOM05D003470 ORTHO05D004157 9.1e-79 300.1 1303 26.7
HPP92_008497 Vanilla planifolia HOM05D003470 ORTHO05D004157 9.1e-79 300.1 1418 30.3
Cpa.g.sc53.171 Carica papaya HOM05D003470 ORTHO05D004157 2.0e-78 298.9 1338 28.3
Nitab4.5_0000255g0010 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.0e-77 296.6 1410 27.0
Haze_16780 Corylus avellana HOM05D003470 ORTHO05D004157 5.0e-77 294.3 665 34.4
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 8.6e-77 293.5 970 31.0
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 1.9e-76 292.4 1361 29.3
Medtr1g090807 Medicago truncatula HOM05D003470 ORTHO05D004157 1.9e-76 292.4 1281 26.8
CAN.G135.27 Capsicum annuum HOM05D003470 ORTHO05D004157 2.1e-75 288.9 1336 26.9
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 3.0e-74 285.0 1368 26.7
Phvul.007G145600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 8.9e-74 283.5 1355 25.8
CsaV3_3G036530 Cucumis sativus L. HOM05D003470 ORTHO05D004157 7.0e-71 273.9 1444 25.6
Haze_16781 Corylus avellana HOM05D003470 ORTHO05D004157 1.2e-70 273.1 686 32.7
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 1.0e-69 270.0 1192 29.4
Nitab4.5_0000593g0330 Nicotiana tabacum HOM05D003470 ORTHO05D004157 9.5e-68 263.5 1329 26.5
MELO3C009401.2 Cucumis melo HOM05D003470 ORTHO05D004157 3.6e-67 261.5 1423 24.4
Peaxi162Scf00543g00019 Petunia axillaris HOM05D003470 ORTHO05D004157 4.7e-67 261.2 1331 28.0
Zm00001eb391920 Zea mays HOM05D003470 ORTHO05D004157 2.6e-65 255.4 1257 25.9
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 2.9e-64 251.9 1422 25.2
Cpa.g.sc5.136 Carica papaya HOM05D003470 ORTHO05D004157 6.4e-64 250.8 590 38.3
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 1.1e-63 250.0 1284 28.3
TPR.G37812 Trifolium pratense HOM05D003470 ORTHO05D004157 5.4e-63 247.7 1271 26.7
Sed0009504 Sechium edule HOM05D003470 ORTHO05D004157 9.2e-63 246.9 436 35.1
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 6.0e-62 244.2 1401 28.1
Phvul.007G226600 Phaseolus vulgaris HOM05D003470 ORTHO05D004157 5.0e-61 241.1 1406 25.7
Lalb_Chr02g0151131 Lupinus albus HOM05D003470 ORTHO05D004157 7.3e-60 237.3 1236 25.2
Ca_11537_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 3.6e-59 235.0 1368 27.4
ATR0043G047 Amborella trichopoda HOM05D003470 ORTHO05D004157 4.0e-58 231.5 1459 27.5
ClCG08G007930 Citrullus lanatus HOM05D003470 ORTHO05D004157 1.2e-57 229.9 1106 26.2
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 3.7e-56 224.9 1401 26.3
PSO478G4813 Papaver somniferum HOM05D003470 ORTHO05D004157 6.0e-54 217.6 364 39.6
Medtr1g062200 Medicago truncatula HOM05D003470 ORTHO05D004157 1.0e-53 216.9 1426 24.2
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 3.0e-53 215.3 1214 26.4
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 3.0e-53 215.3 1214 26.4
Os03g0107400 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 2.5e-52 212.2 590 33.4
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 6.8e-50 204.1 1405 25.3
TWI38G0799 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 6.8e-50 204.1 555 33.9
Psat6g076760 Pisum sativum HOM05D003470 ORTHO05D004157 1.5e-49 203.0 1274 27.1
Gohir.D09G139800 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.0e-49 202.6 601 32.9
SEGI_27097 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 3.4e-49 201.8 1436 24.8
CDE06G1109 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 5.8e-49 201.1 557 30.5
Atru.chr12.915 Acer truncatum HOM05D003470 ORTHO05D004157 2.2e-48 199.1 332 39.2
Haze_16782 Corylus avellana HOM05D003470 ORTHO05D004157 3.7e-48 198.4 1024 27.3
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 4.9e-48 198.0 1373 26.8
Actinidia28929 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.1e-47 196.8 394 36.5
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 1.0e-45 190.3 1362 25.2
CDE03G0074 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 3.9e-45 188.3 580 29.0
Lj5g0018822 Lotus japonicus HOM05D003470 ORTHO05D004157 5.1e-45 188.0 1271 24.5
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 1.4e-42 179.9 1378 25.5
AUR62019445 Chenopodium quinoa HOM05D002464 ORTHO05D002530 5.2e-42 177.9 193 53.9
Lsat_1_v5_gn_8_17720 Lactuca sativa HOM05D003470 ORTHO05D004157 5.2e-42 177.9 540 32.4
Sed0006633 Sechium edule HOM05D003470 ORTHO05D004157 8.9e-42 177.2 1384 25.9
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 4.4e-41 174.9 1385 24.4
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 5.8e-41 174.5 1369 26.4
Gohir.D09G139850 Gossypium hirsutum HOM05D003470 ORTHO05D004157 4.9e-40 171.4 348 34.5
ClCG10G019700 Citrullus lanatus HOM05D003470 ORTHO05D004157 1.6e-35 156.4 1443 23.7
Sed0013053 Sechium edule HOM05D003470 ORTHO05D004157 6.2e-35 154.5 1231 25.3
SalBow6G0046 Salvia bowleyana HOM05D003470 ORTHO05D004157 6.9e-34 151.0 1280 22.3
Eucgr.A01601 Eucalyptus grandis HOM05D003470 ORTHO05D004157 1.4e-31 143.3 274 41.2
Ca_11528_v3 Cicer arietinum L. HOM05D003470 ORTHO05D004157 7.8e-30 137.5 500 25.6
Psat6g076800 Pisum sativum HOM05D003470 ORTHO05D004157 2.5e-28 132.5 349 34.4
CDE02G3590 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.5e-25 123.2 1054 26.3
Os10g0547000 Oryza sativa ssp. japonica HOM05D003470 ORTHO05D004157 1.5e-25 123.2 1258 27.0
Cpa.g.sc850.1 Carica papaya HOM05D003470 ORTHO05D004157 3.8e-24 118.6 420 27.9
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 8.4e-24 117.5 1239 23.6
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 3.2e-23 115.5 349 35.0
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 3.2e-23 115.5 329 33.7
Atru.chr12.916 Acer truncatum HOM05D003470 ORTHO05D004157 3.5e-22 112.1 259 47.9
Eucgr.A01602 Eucalyptus grandis HOM05D003470 ORTHO05D004157 8.7e-21 107.5 825 26.4
Migut.F01673 Erythranthe guttata HOM05D003470 ORTHO05D004157 7.4e-20 104.4 215 35.3
Lj3A935T49 Lonicera japonica HOM05D003470 ORTHO05D004157 2.8e-19 102.4 291 29.9
CDE02G1862 Ceratophyllum demersum HOM05D003470 ORTHO05D004157 1.2e-17 97.1 177 35.0
arahy.Tifrunner.gnm1.ann1.08YI9Q Arachis hypogaea HOM05D003470 ORTHO05D004157 2.0e-17 96.3 439 25.5
SEGI_39816 Sequoiadendron giganteum HOM05D003470 ORTHO05D004157 2.0e-17 96.3 896 21.7
PSO478G2125 Papaver somniferum HOM05D003470 ORTHO05D004157 4.5e-17 95.1 110 52.7
unitig_27.g25387 Utricularia gibba HOM05D003470 ORTHO05D004157 1.3e-13 83.6 392 25.0
Lj3A935G43 Lonicera japonica HOM05D003470 ORTHO05D004157 1.8e-10 73.2 89 50.6
SEGI_12183 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 1.8e-10 73.2 332 23.8
SEGI_22593 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 1.8e-10 73.2 332 23.8
Thecc.10G089600 Theobroma cacao HOM05D003470 ORTHO05D022439 2.9e-08 65.9 400 25.2
AagrBONN_evm.TU.Sc2ySwM_344.3028 Anthoceros agrestis HOM05D003470 ORTHO05D004157 6.5e-08 64.7 1394 20.7
COL.COLO4_32886 Corchorus olitorius HOM05D003470 ORTHO05D022439 1.1e-07 63.9 221 29.0
SMO301G0074 Selaginella moellendorffii HOM05D004450 ORTHO05D004157 1.4e-07 63.5 312 25.3
Medtr6g014000 Medicago truncatula HOM05D000027 ORTHO05D004157 1.9e-07 63.2 120 36.7
SalBow1G3630 Salvia bowleyana HOM05D001888 ORTHO05D001842 7.1e-07 61.2 557 22.3
Medtr5g010520 Medicago truncatula HOM05D001888 ORTHO05D001842 1.2e-06 60.5 429 23.3
Mapoly0011s0198 Marchantia polymorpha HOM05D003470 ORTHO05D001842 2.1e-06 59.7 443 25.5
Gohir.D10G208200 Gossypium hirsutum HOM05D003470 ORTHO05D022439 3.5e-06 58.9 373 24.9
MD14G1099400 Malus domestica HOM05D001888 ORTHO05D001842 6.0e-06 58.2 290 22.4


User provided reference genes

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