Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 1.1e-83 315.5 732 100.0
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.4e-54 218.8 140 74.3
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 7.5e-48 196.4 140 69.3
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.6e-45 188.7 140 65.0
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.0e-44 186.0 139 66.2
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.2e-44 184.9 139 66.9
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 5.0e-44 183.7 139 62.6
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 1.9e-43 181.8 140 63.6
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 1.9e-43 181.8 140 62.9
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 5.5e-43 180.3 139 64.7
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 9.4e-43 179.5 140 63.6
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 1.2e-42 179.1 140 63.6
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.6e-42 178.7 139 64.0
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.6e-42 178.7 139 64.0
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 5.2e-41 173.7 140 61.4
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 6.8e-41 173.3 139 59.0
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 2.6e-40 171.4 140 61.4
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 2.6e-40 171.4 140 61.4
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 4.4e-40 170.6 140 59.3
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 4.4e-40 170.6 140 57.9
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 2.8e-39 167.9 139 56.8
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.8e-39 167.9 141 58.9
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 6.3e-39 166.8 140 60.0
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 6.3e-39 166.8 129 61.2
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 8.3e-39 166.4 138 59.4
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 3.1e-38 164.5 142 59.9
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 3.1e-38 164.5 142 60.6
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 4.1e-38 164.1 140 55.7
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 5.4e-38 163.7 141 58.2
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 7.0e-38 163.3 143 59.4
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.7e-37 161.4 141 56.7
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.5e-37 160.6 142 58.5
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 7.7e-37 159.8 140 56.4
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 2.9e-36 157.9 142 55.6
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 8.5e-36 156.4 141 59.6
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.9e-35 155.2 142 56.3
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 4.2e-35 154.1 142 54.9
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 4.2e-35 154.1 142 55.6
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 7.2e-35 153.3 139 54.0
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 9.4e-35 152.9 140 55.0
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 4.7e-34 150.6 139 56.1
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.1e-34 150.2 140 52.9
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 8.0e-34 149.8 140 52.9
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 8.0e-34 149.8 140 52.9
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 8.0e-34 149.8 139 53.2
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.4e-33 149.1 140 52.9
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 2.3e-33 148.3 142 54.9
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 6.8e-33 146.7 145 56.6
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 8.8e-33 146.4 140 52.1
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.2e-32 146.0 142 55.6
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 2.0e-32 145.2 142 54.2
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 2.0e-32 145.2 142 55.6
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 2.6e-32 144.8 142 54.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 2.6e-32 144.8 141 55.3
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 9.8e-32 142.9 140 55.7
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 2.2e-31 141.7 140 49.3
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.1e-30 139.4 143 51.7
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.1e-30 139.4 143 51.7
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 1.4e-30 139.0 146 48.6
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 4.1e-30 137.5 140 48.6
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 7.0e-30 136.7 145 52.4
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 9.2e-30 136.3 141 51.8
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 4.5e-29 134.0 140 54.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 7.7e-29 133.3 143 50.3
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 7.7e-29 133.3 143 50.3
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 2.9e-28 131.3 143 49.7
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 3.8e-28 131.0 140 50.0
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 3.3e-27 127.9 139 47.5
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 5.6e-27 127.1 141 49.6
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 9.5e-27 126.3 140 46.4
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 9.5e-27 126.3 140 46.4
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.2e-26 125.9 139 48.2
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.2e-26 125.9 139 46.8
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.1e-26 125.2 140 51.4
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 3.6e-26 124.4 143 49.0
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 8.0e-26 123.2 142 47.9
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.3e-25 121.7 140 46.4
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.8e-25 120.2 143 48.3
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.5e-24 119.0 105 53.3
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.2e-23 115.2 100 58.0
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.3e-23 113.2 131 50.4
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 1.1e-22 112.8 96 56.2
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.1e-22 110.9 130 46.9
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 7.0e-22 110.2 146 45.9
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 1.5e-19 102.4 68 67.6
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.5e-19 102.4 143 44.8
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.9e-19 102.1 90 58.9
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 9.5e-19 99.8 68 66.2
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 8.0e-18 96.7 140 39.3
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 1.8e-17 95.5 67 62.7
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 5.2e-17 94.0 96 53.1
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.2e-16 92.8 142 42.3
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 3.4e-16 91.3 145 44.1
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 7.5e-16 90.1 68 63.2
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 9.8e-16 89.7 85 51.8
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.3e-15 89.4 94 45.7
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 2.2e-15 88.6 79 57.0
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 2.2e-15 88.6 79 57.0
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 3.7e-15 87.8 93 48.4
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 4.9e-15 87.4 88 48.9
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 2.4e-14 85.1 97 48.5
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.4e-14 84.0 94 41.5
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.0e-14 83.6 77 49.4
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 1.6e-13 82.4 67 58.2
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 2.0e-13 82.0 118 44.1
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 3.5e-13 81.3 73 53.4
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.5e-13 81.3 73 53.4
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 4.6e-13 80.9 131 40.5
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 4.6e-13 80.9 106 48.1
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 6.0e-13 80.5 67 50.7
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 6.0e-13 80.5 65 55.4
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-12 79.3 73 53.4
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 1.7e-12 79.0 68 57.4
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.0e-12 78.2 111 40.5
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 3.9e-12 77.8 73 53.4
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.9e-12 77.8 73 53.4
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 5.0e-12 77.4 64 56.2
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 8.6e-12 76.6 70 52.9
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.3e-11 74.7 67 55.2
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.3e-11 74.7 67 55.2
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 8.9e-09 66.6 64 53.1
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-08 65.5 64 51.6
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 2.0e-08 65.5 142 31.7
arahy.Tifrunner.gnm1.ann1.DD86YU Arachis hypogaea HOM05D005287 ORTHO05D006893 2.6e-08 65.1 64 51.6
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 4.4e-08 64.3 144 34.0
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 5.8e-08 63.9 73 49.3
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 7.5e-08 63.5 84 35.7
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 3.7e-07 61.2 84 36.9
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 3.7e-07 61.2 86 33.7
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 6.4e-07 60.5 125 32.8
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 8.3e-07 60.1 59 45.8
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 8.3e-07 60.1 84 35.7
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 8.3e-07 60.1 86 40.7
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 1.1e-06 59.7 84 35.7
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.1e-06 59.7 84 35.7
CAN.G322.18 Capsicum annuum HOM05D006858 ORTHO05D008767 1.4e-06 59.3 84 33.3
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.4e-06 59.3 124 32.3
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 1.9e-06 58.9 126 32.5
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 3.2e-06 58.2 84 35.7
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 3.2e-06 58.2 84 35.7
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 3.2e-06 58.2 84 35.7
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 4.1e-06 57.8 82 39.0
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 4.1e-06 57.8 126 31.7
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 4.1e-06 57.8 124 32.3
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 4.1e-06 57.8 125 32.0
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 5.4e-06 57.4 125 32.0
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.4e-06 57.4 124 32.3
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 5.4e-06 57.4 90 34.4
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 7.1e-06 57.0 124 29.8
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 7.1e-06 57.0 83 38.6
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 7.1e-06 57.0 120 32.5
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 9.2e-06 56.6 96 31.2
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 9.2e-06 56.6 124 33.1


User provided reference genes

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