Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.7e-58 226.9 109 100.0
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 5.0e-25 117.9 96 57.3
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.5e-24 115.5 96 59.4
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.2e-23 113.2 98 57.1
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 2.1e-23 112.5 94 57.4
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 4.0e-22 108.2 93 53.8
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 6.8e-22 107.5 87 59.8
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.2e-21 106.7 109 51.4
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.5e-21 106.3 97 56.7
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 5.7e-21 104.4 96 51.0
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 9.8e-21 103.6 97 54.6
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 9.8e-21 103.6 97 54.6
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.2e-20 102.4 98 57.1
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.8e-19 99.4 93 51.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 1.8e-19 99.4 87 57.5
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 4.1e-19 98.2 96 49.0
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.2e-18 96.7 80 57.5
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.6e-18 96.3 85 52.9
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.6e-18 96.3 92 50.0
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 2.0e-18 95.9 94 47.9
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 2.7e-18 95.5 85 54.1
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 2.7e-18 95.5 85 52.9
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 2.7e-18 95.5 96 49.0
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.5e-18 95.1 101 50.5
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 3.5e-18 95.1 85 54.1
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 4.5e-18 94.7 94 46.8
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.5e-18 94.7 94 47.9
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 5.9e-18 94.4 80 58.8
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 7.8e-18 94.0 94 48.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 1.3e-17 93.2 86 53.5
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.3e-17 93.2 86 53.5
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.3e-17 92.4 86 52.3
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 2.3e-17 92.4 86 52.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 2.3e-17 92.4 86 52.3
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 5.0e-17 91.3 90 48.9
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 8.6e-17 90.5 116 44.0
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 8.6e-17 90.5 94 46.8
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.1e-16 90.1 86 51.2
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.5e-16 89.7 86 52.3
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.9e-16 89.4 87 49.4
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 1.9e-16 89.4 96 53.1
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 5.6e-16 87.8 94 52.1
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 7.3e-16 87.4 98 49.0
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 2.8e-15 85.5 85 51.8
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.0e-14 83.6 99 48.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 5.2e-14 81.3 84 50.0
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 2.0e-13 79.3 87 47.1
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 3.4e-13 78.6 92 45.7
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.8e-13 77.8 99 47.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 7.5e-13 77.4 64 60.9
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 7.5e-13 77.4 64 60.9
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 7.5e-13 77.4 99 47.5
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 7.5e-13 77.4 94 43.6
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 2.2e-12 75.9 87 44.8
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.9e-12 75.5 58 56.9
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 3.7e-12 75.1 99 42.4
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 4.9e-12 74.7 63 52.4
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 6.4e-12 74.3 59 59.3
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 8.3e-12 73.9 80 46.2
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 8.3e-12 73.9 94 42.6
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.1e-11 73.6 98 44.9
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.4e-11 73.2 80 46.2
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.4e-11 73.2 101 41.6
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.9e-11 72.8 90 43.3
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 4.1e-11 71.6 81 43.2
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 5.4e-11 71.2 87 44.8
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 5.4e-11 71.2 100 41.0
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.2e-10 70.1 87 43.7
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 1.6e-10 69.7 98 42.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-10 69.3 68 51.5
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 3.5e-10 68.6 99 40.4
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.5e-10 68.6 99 41.4
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.6e-10 68.2 94 35.1
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.3e-09 65.9 78 42.3
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 3.9e-09 65.1 99 39.4
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 8.6e-09 63.9 75 41.3
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.1e-08 63.5 96 39.6
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.1e-08 63.5 114 34.2
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 2.5e-08 62.4 93 36.6
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 9.5e-08 60.5 79 41.8
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 6.2e-07 57.8 64 45.3
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 8.0e-07 57.4 99 40.4
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 1.4e-06 56.6 94 39.4
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.8e-06 56.2 51 51.0
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.1e-06 55.5 53 52.8


User provided reference genes

Program Settings