Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 2.3e-119 432.2 211 100.0
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.3e-82 310.1 214 73.4
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.1e-81 307.0 211 74.4
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.5e-81 305.8 211 74.4
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 1.3e-77 293.5 212 70.3
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 7.8e-75 284.3 203 70.0
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 6.6e-74 281.2 202 68.8
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 8.7e-74 280.8 210 65.2
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.3e-73 278.5 203 67.0
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 7.3e-73 277.7 207 66.7
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.3e-72 276.9 206 70.4
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 3.6e-72 275.4 203 67.0
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 3.6e-72 275.4 210 67.6
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 4.8e-72 275.0 203 67.0
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.1e-71 273.9 210 67.6
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.4e-71 273.5 206 70.4
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.8e-71 273.1 203 67.0
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 4.0e-71 271.9 210 67.6
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 4.0e-71 271.9 210 67.6
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.2e-70 270.4 201 68.7
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.0e-70 269.6 210 66.7
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 5.8e-70 268.1 202 66.3
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 5.8e-70 268.1 206 63.1
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 5.8e-70 268.1 203 66.0
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 1.3e-69 266.9 207 64.7
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 4.9e-69 265.0 206 66.5
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 6.4e-69 264.6 203 63.5
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 8.4e-69 264.2 203 65.0
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.1e-68 263.8 203 64.0
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.1e-68 263.8 203 64.0
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.4e-68 263.5 203 66.0
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 1.4e-68 263.5 208 63.9
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 2.4e-68 262.7 206 67.0
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 3.2e-68 262.3 202 67.3
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 3.2e-68 262.3 199 64.3
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 7.1e-68 261.2 210 64.8
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 9.3e-68 260.8 206 64.1
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 9.3e-68 260.8 201 65.7
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 9.3e-68 260.8 210 61.0
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.1e-67 259.6 208 60.6
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 2.1e-67 259.6 202 64.9
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.7e-67 259.2 203 64.0
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 3.5e-67 258.8 203 63.5
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 4.6e-67 258.5 206 61.7
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 6.0e-67 258.1 203 64.5
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 6.0e-67 258.1 201 65.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 7.9e-67 257.7 210 64.3
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.0e-66 257.3 203 60.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 1.0e-66 257.3 201 64.2
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.3e-66 256.9 210 64.3
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 3.0e-66 255.8 198 62.6
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 3.0e-66 255.8 206 61.7
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.1e-65 253.8 206 59.7
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.9e-65 253.1 203 63.1
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.9e-65 253.1 203 63.1
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.9e-65 253.1 219 61.2
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.3e-65 252.3 203 63.1
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.3e-65 251.9 203 63.1
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 5.6e-65 251.5 202 58.9
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.3e-65 251.1 203 63.1
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 9.6e-65 250.8 203 62.6
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 9.6e-65 250.8 202 58.9
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.3e-64 250.4 203 63.1
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.3e-64 250.4 203 63.1
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.6e-64 250.0 205 59.0
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 2.8e-64 249.2 201 62.7
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 6.2e-64 248.1 203 62.1
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.4e-63 246.9 206 63.1
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 5.3e-63 245.0 206 57.8
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 6.9e-63 244.6 206 57.8
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 6.9e-63 244.6 213 56.3
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 9.0e-63 244.2 200 62.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.2e-62 243.8 213 55.9
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.5e-62 243.4 213 55.9
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 1.5e-62 243.4 206 57.3
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 2.0e-62 243.0 203 59.1
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 3.4e-62 242.3 203 60.1
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 4.5e-62 241.9 206 56.8
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 4.5e-62 241.9 206 56.8
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.3e-61 240.4 206 56.3
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-61 240.0 206 56.3
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 2.9e-61 239.2 212 54.7
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 4.9e-61 238.4 210 54.8
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 1.1e-60 237.3 202 61.4
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.4e-60 236.9 206 55.8
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 1.9e-60 236.5 206 55.3
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 2.4e-60 236.1 206 55.3
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 7.1e-60 234.6 210 54.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 9.3e-60 234.2 206 54.4
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 2.1e-59 233.0 189 64.6
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 8.7e-58 227.6 202 59.9
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 2.5e-57 226.1 169 68.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 5.3e-55 218.4 173 65.9
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 8.7e-50 201.1 203 53.2
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 8.7e-50 201.1 203 53.2
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.5e-49 200.3 169 62.7
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 1.9e-49 199.9 169 62.7
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 3.3e-49 199.1 173 57.2
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 7.6e-46 188.0 203 51.2
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 2.2e-45 186.4 203 51.7
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 6.5e-45 184.9 132 68.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 2.5e-44 183.0 153 62.1
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 2.3e-42 176.4 114 73.7
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 2.5e-41 172.9 135 64.4
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.5e-41 172.9 216 44.0
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-39 167.2 132 62.9
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 5.3e-39 165.2 102 74.5
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 1.0e-34 151.0 102 70.6
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 3.9e-34 149.1 98 67.3
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 3.7e-32 142.5 87 75.9
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 5.0e-29 132.1 222 36.9
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 9.4e-28 127.9 89 70.8
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 1.5e-25 120.6 102 57.8
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 3.8e-21 105.9 110 51.8
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 3.8e-21 105.9 110 51.8
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 3.8e-21 105.9 110 51.8
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 3.8e-21 105.9 110 51.8
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 3.8e-21 105.9 110 51.8
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-14 84.3 142 40.8
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 2.7e-11 73.2 51 60.8
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 3.6e-11 72.8 51 60.8
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 3.6e-11 72.8 51 60.8
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 4.7e-11 72.4 55 56.4
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 4.7e-11 72.4 52 59.6
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 6.1e-11 72.0 51 60.8
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.0e-10 71.2 73 50.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.3e-10 70.1 75 50.7
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.4e-07 60.1 48 56.2
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.4e-07 60.1 34 70.6
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 3.1e-07 59.7 39 59.0
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.1e-07 59.7 34 70.6


User provided reference genes

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