Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001160 Simmondsia chinensis HOM05D000347 ORTHO05D387802 8.4e-108 393.7 194 100.0
Ah.10g033740 Amaranthus hybridus HOM05D000347 ORTHO05D006408 3.5e-37 159.1 159 57.2
Ciclev10008890m.g Citrus clementina HOM05D000347 ORTHO05D006408 1.0e-36 157.5 141 63.1
Eucgr.C02094 Eucalyptus grandis HOM05D000347 ORTHO05D006408 1.3e-36 157.1 136 63.2
Lj7P752T43 Lonicera japonica HOM05D000347 ORTHO05D006408 1.7e-36 156.8 144 60.4
TAR636G1446 Trochodendron aralioides HOM05D000347 ORTHO05D006408 6.6e-36 154.8 151 60.3
GSVIVG01035535001 Vitis vinifera HOM05D000347 ORTHO05D006408 8.6e-36 154.5 136 64.0
Phvul.001G058700 Phaseolus vulgaris HOM05D000347 ORTHO05D006408 1.1e-35 154.1 140 60.7
Hma1.2p1_0379F.1_g139810 Hydrangea macrophylla HOM05D000347 ORTHO05D006408 1.9e-35 153.3 134 64.2
VMungo0647G0545 Vigna mungo HOM05D000347 ORTHO05D006408 1.9e-35 153.3 141 59.6
CSS0040231 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D006408 3.3e-35 152.5 142 60.6
Dinv03490 Davidia involucrata HOM05D000347 ORTHO05D006408 3.3e-35 152.5 134 63.4
Glyma.11G173028 Glycine max HOM05D000347 ORTHO05D006408 4.3e-35 152.1 140 60.0
MD08G1131200 Malus domestica HOM05D000347 ORTHO05D006408 4.3e-35 152.1 142 60.6
MD15G1108900 Malus domestica HOM05D000347 ORTHO05D006408 4.3e-35 152.1 142 61.3
TAR636G3556 Trochodendron aralioides HOM05D000347 ORTHO05D006408 4.3e-35 152.1 143 61.5
COL.COLO4_19044 Corchorus olitorius HOM05D000347 ORTHO05D006408 5.6e-35 151.8 142 62.0
Glyma.17G189500 Glycine max HOM05D000347 ORTHO05D006408 5.6e-35 151.8 140 60.0
Atru.chr7.2630 Acer truncatum HOM05D000347 ORTHO05D006408 7.3e-35 151.4 145 60.7
Prupe.1G461100 Prunus persica HOM05D000347 ORTHO05D006408 7.3e-35 151.4 134 63.4
MSTRG.11812 Avicennia marina HOM05D000347 ORTHO05D006408 9.5e-35 151.0 147 58.5
Cfa013260 Carpinus fangiana HOM05D000347 ORTHO05D006408 9.5e-35 151.0 141 61.7
Haze_21720 Corylus avellana HOM05D000347 ORTHO05D006408 9.5e-35 151.0 141 61.7
Nn8g40613 Nelumbo nucifera HOM05D000347 ORTHO05D006408 9.5e-35 151.0 141 60.3
Aa31LG2G18940 Aethionema arabicum HOM05D000347 ORTHO05D006408 1.6e-34 150.2 129 65.9
CAN.G566.60 Capsicum annuum HOM05D000347 ORTHO05D006408 1.6e-34 150.2 142 59.2
Manes.03G003100 Manihot esculenta HOM05D000347 ORTHO05D006408 1.6e-34 150.2 145 59.3
Hund03283 Selenicereus undatus HOM05D000347 ORTHO05D006408 1.6e-34 150.2 150 60.7
QL12p024933 Quercus lobata HOM05D000347 ORTHO05D006408 2.1e-34 149.8 136 62.5
PGSC0003DMG400029366 Solanum tuberosum HOM05D000347 ORTHO05D006408 2.1e-34 149.8 144 58.3
Aqoxy7G02368 Aquilegia oxysepala HOM05D000347 ORTHO05D006408 2.8e-34 149.4 126 64.3
Duzib168G2186 Durio zibethinus HOM05D000347 ORTHO05D006408 2.8e-34 149.4 138 60.9
RcHm_v2.0_Chr6g0304861 Rosa chinensis HOM05D000347 ORTHO05D006408 2.8e-34 149.4 141 60.3
Lalb_Chr08g0243611 Lupinus albus HOM05D000347 ORTHO05D006408 3.6e-34 149.1 136 60.3
PGR044G2643 Punica granatum HOM05D000347 ORTHO05D006408 3.6e-34 149.1 143 60.1
TWI34G1558 Tripterygium wilfordii HOM05D000347 ORTHO05D006408 3.6e-34 149.1 147 57.1
Peaxi162Scf00459g00836 Petunia axillaris HOM05D000347 ORTHO05D006408 6.2e-34 148.3 134 60.4
Sabra06G0213200 Salix brachista HOM05D000347 ORTHO05D006408 6.2e-34 148.3 178 51.1
SalBow4G3319 Salvia bowleyana HOM05D000347 ORTHO05D006408 6.2e-34 148.3 141 57.4
Rhsim07G0170600 Rhododendron simsii HOM05D000347 ORTHO05D006408 8.1e-34 147.9 134 61.9
Ca_12872_v3 Cicer arietinum L. HOM05D000347 ORTHO05D006408 1.1e-33 147.5 148 54.7
FAN27G3138 Fragaria x ananassa HOM05D000347 ORTHO05D006408 1.4e-33 147.1 143 58.7
Glyma.17G200301 Glycine max HOM05D000347 ORTHO05D006408 1.4e-33 147.1 140 58.6
Lj5g0003100 Lotus japonicus HOM05D000347 ORTHO05D006408 1.4e-33 147.1 136 58.8
Solyc12g096460.3 Solanum lycopersicum HOM05D000347 ORTHO05D006408 1.4e-33 147.1 142 57.7
Sopen12g032290 Solanum pennellii HOM05D000347 ORTHO05D006408 1.4e-33 147.1 142 57.7
Oeu047999.1 Olea europaea HOM05D000347 ORTHO05D006408 1.8e-33 146.7 134 59.7
arahy.Tifrunner.gnm1.ann1.VY3H9B Arachis hypogaea HOM05D000347 ORTHO05D006408 2.3e-33 146.4 154 55.2
Nitab4.5_0000668g0050 Nicotiana tabacum HOM05D000347 ORTHO05D006408 2.3e-33 146.4 144 56.9
Sed0000185 Sechium edule HOM05D000347 ORTHO05D006408 3.1e-33 146.0 141 59.6
EL10Ac2g03736 Beta vulgaris HOM05D000347 ORTHO05D006408 5.2e-33 145.2 138 60.1
CiPaw.07G213800 Carya illinoinensis HOM05D000347 ORTHO05D006408 5.2e-33 145.2 142 60.6
CiPaw.08G019000 Carya illinoinensis HOM05D000347 ORTHO05D006408 5.2e-33 145.2 147 59.2
AUR62020614 Chenopodium quinoa HOM05D000347 ORTHO05D006408 5.2e-33 145.2 136 59.6
arahy.Tifrunner.gnm1.ann1.FYF4Q1 Arachis hypogaea HOM05D000347 ORTHO05D006408 6.8e-33 144.8 136 59.6
vmacro05101 Vaccinium macrocarpon HOM05D000347 ORTHO05D006408 8.9e-33 144.4 134 59.7
MSTRG.25775 Avicennia marina HOM05D000347 ORTHO05D006408 1.2e-32 144.1 144 55.6
AUR62009048 Chenopodium quinoa HOM05D000347 ORTHO05D006408 1.2e-32 144.1 134 59.7
Potri.018G006400 Populus trichocarpa HOM05D000347 ORTHO05D006408 1.2e-32 144.1 142 58.5
PSO017G5514 Papaver somniferum HOM05D000347 ORTHO05D006408 1.5e-32 143.7 129 61.2
TWI32G0328 Tripterygium wilfordii HOM05D000347 ORTHO05D006408 1.5e-32 143.7 133 60.2
CANSAT25G1153 Cannabis sativa HOM05D000347 ORTHO05D006408 2.6e-32 142.9 135 60.0
Nitab4.5_0001110g0190 Nicotiana tabacum HOM05D000347 ORTHO05D006408 4.4e-32 142.1 141 56.0
PSO170G6474 Papaver somniferum HOM05D000347 ORTHO05D006408 4.4e-32 142.1 129 60.5
CARHR239290 Cardamine hirsuta HOM05D000347 ORTHO05D006408 5.8e-32 141.7 136 58.1
Glyma.14G133700 Glycine max HOM05D000347 ORTHO05D006408 5.8e-32 141.7 134 60.4
CsaV3_2G031450 Cucumis sativus L. HOM05D000347 ORTHO05D006408 9.8e-32 141.0 136 59.6
Migut.A00440 Erythranthe guttata HOM05D000347 ORTHO05D006408 9.8e-32 141.0 134 57.5
Glyma.06G075800 Glycine max HOM05D000347 ORTHO05D006408 9.8e-32 141.0 153 54.9
Lalb_Chr11g0064101 Lupinus albus HOM05D000347 ORTHO05D006408 9.8e-32 141.0 136 58.8
Potri.006G275400 Populus trichocarpa HOM05D000347 ORTHO05D006408 9.8e-32 141.0 136 58.8
ClCG08G012720 Citrullus lanatus HOM05D000347 ORTHO05D006408 1.3e-31 140.6 136 59.6
Lsat_1_v5_gn_5_56541 Lactuca sativa HOM05D000347 ORTHO05D006408 1.3e-31 140.6 147 56.5
HanXRQChr13g0411861 Helianthus annuus HOM05D000347 ORTHO05D006408 2.2e-31 139.8 134 59.7
FvH4_2g36920 Fragaria vesca HOM05D000347 ORTHO05D006408 2.9e-31 139.4 128 61.7
FAN15G0145 Fragaria x ananassa HOM05D000347 ORTHO05D006408 2.9e-31 139.4 128 61.7
Duzib150G1600 Durio zibethinus HOM05D000347 ORTHO05D006408 3.7e-31 139.0 146 56.2
Gohir.A07G001300 Gossypium hirsutum HOM05D000347 ORTHO05D006408 3.7e-31 139.0 146 56.2
VMungo1309G1204 Vigna mungo HOM05D000347 ORTHO05D006408 3.7e-31 139.0 135 59.3
THA.LOC104803596 Tarenaya hassleriana HOM05D000347 ORTHO05D006408 4.9e-31 138.7 143 57.3
MELO3C011194.2 Cucumis melo HOM05D000347 ORTHO05D006408 8.3e-31 137.9 136 58.1
Sed0024873 Sechium edule HOM05D000347 ORTHO05D006408 1.1e-30 137.5 136 58.8
BcaB03g12694 Brassica carinata HOM05D000347 ORTHO05D006408 1.9e-30 136.7 141 59.6
Thecc.09G006200 Theobroma cacao HOM05D000347 ORTHO05D006408 2.4e-30 136.3 142 57.0
DCAR_000670 Daucus carota HOM05D000347 ORTHO05D006408 3.2e-30 136.0 161 52.2
Gohir.A06G106300 Gossypium hirsutum HOM05D000347 ORTHO05D006408 3.2e-30 136.0 137 56.2
Gorai.010G123200 Gossypium raimondii HOM05D000347 ORTHO05D006408 4.1e-30 135.6 137 56.9
FAN20G1887 Fragaria x ananassa HOM05D000347 ORTHO05D006408 5.4e-30 135.2 128 60.2
MBI14_g17382_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D006408 5.4e-30 135.2 132 56.8
BcaC09g51920 Brassica carinata HOM05D000347 ORTHO05D006408 1.6e-29 133.7 146 58.2
C01p07640 Brassica napus HOM05D000347 ORTHO05D006408 1.6e-29 133.7 146 58.2
BolC1t00744H Brassica oleracea HOM05D000347 ORTHO05D006408 1.6e-29 133.7 146 58.2
Sabra18G0014400 Salix brachista HOM05D000347 ORTHO05D006408 1.6e-29 133.7 135 57.0
Cc00_g03650 Coffea canephora HOM05D000347 ORTHO05D006408 2.1e-29 133.3 134 58.2
Gohir.D06G108500 Gossypium hirsutum HOM05D000347 ORTHO05D006408 2.1e-29 133.3 137 56.2
HanXRQChr03g0081261 Helianthus annuus HOM05D000347 ORTHO05D006408 2.7e-29 132.9 145 51.7
ECA240G1090 Erigeron canadensis HOM05D000347 ORTHO05D006408 3.5e-29 132.5 135 55.6
Thhalv10025953m.g Eutrema salsugineum HOM05D000347 ORTHO05D006408 1.7e-28 130.2 113 62.8
Lj1g0020250 Lotus japonicus HOM05D000347 ORTHO05D006408 2.3e-28 129.8 139 56.1
Medtr1g009790 Medicago truncatula HOM05D000347 ORTHO05D006408 3.0e-28 129.4 148 51.4
A01p06870 Brassica napus HOM05D000347 ORTHO05D006408 8.6e-28 127.9 149 55.0
Psat6g007600 Pisum sativum HOM05D000347 ORTHO05D006408 4.3e-27 125.6 145 52.4
BraA01t00638Z Brassica rapa HOM05D000347 ORTHO05D006408 5.6e-27 125.2 146 55.5
Gorai.001G001400 Gossypium raimondii HOM05D000347 ORTHO05D006408 5.6e-27 125.2 144 52.1
TPR.G12103 Trifolium pratense HOM05D000347 ORTHO05D006408 5.6e-27 125.2 142 50.7
Sc09g0008050 Simmondsia chinensis HOM05D000347 ORTHO05D006408 9.5e-27 124.4 142 52.1
AL7G20650 Arabidopsis lyrata HOM05D000347 ORTHO05D006408 1.2e-26 124.0 136 53.7
AT4G31410 Arabidopsis thaliana HOM05D000347 ORTHO05D006408 1.2e-26 124.0 136 53.7
MSTRG.13942 Avicennia marina HOM05D000347 ORTHO05D006408 1.6e-26 123.6 141 51.8
Sp7g29270 Schrenkiella parvula HOM05D000347 ORTHO05D006408 3.6e-26 122.5 136 52.9
BcaB03g12692 Brassica carinata HOM05D000347 ORTHO05D006408 4.7e-26 122.1 152 53.3
MBI16_g31784_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D006408 4.7e-26 122.1 103 64.1
SGA_v2.0_scaffold27G11670 Striga asiatica HOM05D000347 ORTHO05D006408 1.1e-25 120.9 134 55.2
SGA_v2.0_scaffold193G40659 Striga asiatica HOM05D000347 ORTHO05D006408 1.4e-25 120.6 141 53.2
CDE04G3604 Ceratophyllum demersum HOM05D000347 ORTHO05D006408 1.8e-25 120.2 148 53.4
Gohir.D07G001700 Gossypium hirsutum HOM05D000347 ORTHO05D006408 6.8e-25 118.2 138 51.4
Cpa.g.sc23.3 Carica papaya HOM05D000347 ORTHO05D006408 1.5e-24 117.1 129 56.6
CDE02G3467 Ceratophyllum demersum HOM05D000347 ORTHO05D006408 7.6e-24 114.8 148 52.0
Carub.0007s0915 Capsella rubella HOM05D000347 ORTHO05D006408 1.1e-22 110.9 136 50.0
BcaC01g01090 Brassica carinata HOM05D000347 ORTHO05D006408 4.6e-21 105.5 133 51.1
C03p87990 Brassica napus HOM05D000347 ORTHO05D006408 4.6e-21 105.5 133 51.1
BolC3t21110H Brassica oleracea HOM05D000347 ORTHO05D006408 4.6e-21 105.5 133 51.1
BraA08t33826Z Brassica rapa HOM05D000347 ORTHO05D006408 1.0e-20 104.4 133 50.4
BcaNung04591 Brassica carinata HOM05D000347 ORTHO05D006408 3.0e-20 102.8 161 46.6
A08p18630 Brassica napus HOM05D000347 ORTHO05D006408 3.9e-20 102.4 133 49.6
Actinidia06422 Actinidia chinensis HOM05D000347 ORTHO05D006408 1.1e-19 100.9 67 70.1
ATR0368G002 Amborella trichopoda HOM05D000347 ORTHO05D006408 1.1e-17 94.4 134 46.3
SalBow8G2789 Salvia bowleyana HOM05D000347 ORTHO05D006408 1.4e-17 94.0 147 42.2
AUR62009049 Chenopodium quinoa HOM05D000347 ORTHO05D006408 6.9e-17 91.7 61 77.0
Phvul.009G100500 Phaseolus vulgaris HOM05D000347 ORTHO05D006408 6.9e-17 91.7 61 73.8
Os02g0150900 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D006408 7.6e-16 88.2 72 56.9
Zm00001eb226240 Zea mays HOM05D000347 ORTHO05D006408 7.6e-16 88.2 131 45.8
Zm00001eb273300 Zea mays HOM05D000347 ORTHO05D006408 7.6e-16 88.2 128 43.8
Os06g0693700 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D006408 1.7e-15 87.0 133 42.1
AUR62044573 Chenopodium quinoa HOM05D000347 ORTHO05D006408 2.9e-15 86.3 68 64.7
unitig_32.g11645 Utricularia gibba HOM05D000347 ORTHO05D006408 6.4e-15 85.1 123 43.9
HPP92_018567 Vanilla planifolia HOM05D000347 ORTHO05D006408 1.9e-14 83.6 128 43.8
unitig_747.g21380 Utricularia gibba HOM05D000347 ORTHO05D006408 5.4e-14 82.0 122 45.1
unitig_748.g7382 Utricularia gibba HOM05D000347 ORTHO05D006408 5.4e-14 82.0 112 47.3
Zm00001eb207970 Zea mays HOM05D000347 ORTHO05D006408 1.0e-12 77.8 71 54.9
unitig_0.g2191 Utricularia gibba HOM05D000347 ORTHO05D006408 1.3e-12 77.4 120 41.7
HPP92_010464 Vanilla planifolia HOM05D000347 ORTHO05D006408 1.9e-11 73.6 115 42.6
Zm00001eb270870 Zea mays HOM05D000347 ORTHO05D006408 1.5e-08 63.9 111 41.4


User provided reference genes

Program Settings