Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 2.3e-57 225.3 112 100.0
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 1.4e-22 109.8 107 53.3
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.6e-21 106.3 112 55.4
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 5.9e-21 104.4 106 56.6
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 5.9e-21 104.4 95 55.8
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 5.9e-21 104.4 97 53.6
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 5.9e-21 104.4 97 53.6
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.0e-20 103.6 95 53.7
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.7e-20 102.8 107 55.1
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.9e-20 102.1 107 53.3
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 3.8e-20 101.7 112 52.7
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 5.0e-20 101.3 95 52.6
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 5.0e-20 101.3 105 46.7
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 5.0e-20 101.3 105 56.2
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.1e-19 100.1 111 54.1
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.5e-19 99.8 98 57.1
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 2.5e-19 99.0 112 49.1
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 3.2e-19 98.6 102 54.9
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 9.4e-19 97.1 104 49.0
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.2e-18 96.7 95 49.5
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.2e-18 96.7 92 52.2
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 1.6e-18 96.3 95 55.8
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.6e-18 96.3 96 58.3
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.6e-18 96.3 107 51.4
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.6e-18 95.1 96 51.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-18 95.1 103 46.6
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 3.6e-18 95.1 96 47.9
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 3.6e-18 95.1 114 50.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 3.6e-18 95.1 95 50.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 3.6e-18 95.1 103 47.6
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 4.7e-18 94.7 107 50.5
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 6.1e-18 94.4 112 44.6
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 8.0e-18 94.0 95 47.4
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 1.0e-17 93.6 107 46.7
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 1.0e-17 93.6 107 46.7
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 1.4e-17 93.2 100 50.0
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.4e-17 93.2 107 48.6
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 1.8e-17 92.8 104 47.1
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 1.8e-17 92.8 104 47.1
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.8e-17 92.8 105 53.3
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.8e-17 92.8 110 45.5
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 2.3e-17 92.4 102 48.0
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 2.3e-17 92.4 112 48.2
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 3.0e-17 92.0 104 47.1
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 4.0e-17 91.7 109 45.9
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 4.0e-17 91.7 113 46.9
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 6.7e-17 90.9 106 46.2
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 6.7e-17 90.9 110 48.2
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 8.8e-17 90.5 112 45.5
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.2e-16 90.1 107 51.4
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.2e-16 90.1 104 47.1
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.2e-16 90.1 95 50.5
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 1.5e-16 89.7 102 47.1
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 2.6e-16 89.0 100 48.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.6e-16 89.0 112 50.0
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.6e-16 89.0 95 48.4
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 3.3e-16 88.6 107 46.7
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 3.3e-16 88.6 102 48.0
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 3.3e-16 88.6 108 49.1
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 4.4e-16 88.2 106 49.1
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 4.4e-16 88.2 94 46.8
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 4.4e-16 88.2 102 46.1
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 5.7e-16 87.8 95 49.5
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 1.3e-15 86.7 104 46.2
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.3e-15 86.7 106 43.4
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 1.7e-15 86.3 102 45.1
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.8e-15 85.5 81 56.8
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 3.7e-15 85.1 103 47.6
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.7e-15 85.1 106 44.3
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 6.3e-15 84.3 106 44.3
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 6.3e-15 84.3 106 46.2
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 8.2e-15 84.0 94 45.7
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 8.2e-15 84.0 94 45.7
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.4e-14 83.2 96 45.8
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 4.1e-14 81.6 96 45.8
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 4.1e-14 81.6 90 46.7
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 9.1e-14 80.5 99 44.4
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 9.1e-14 80.5 94 43.6
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.2e-13 80.1 106 42.5
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 2.7e-13 79.0 107 43.0
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 2.7e-13 79.0 90 42.2
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 4.5e-13 78.2 96 44.8
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 2.9e-12 75.5 102 43.1
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 3.8e-12 75.1 102 43.1
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 1.1e-11 73.6 94 41.5
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.5e-11 73.2 110 39.1
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 4.2e-11 71.6 106 39.6
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.2e-10 70.1 106 41.5
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.0e-09 67.0 72 44.4
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 3.0e-09 65.5 103 37.9
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 2.6e-08 62.4 67 41.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 3.4e-08 62.0 88 39.8
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 4.8e-07 58.2 80 43.8
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 8.3e-07 57.4 96 38.5
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 1.8e-06 56.2 39 59.0
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 9.1e-06 53.9 130 32.3


User provided reference genes

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