Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 3.6e-121 438.3 234 100.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 3.6e-73 278.9 221 69.2
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 2.6e-71 272.7 222 66.2
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 9.9e-71 270.8 212 69.8
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 6.4e-70 268.1 198 72.2
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 1.6e-68 263.5 214 65.9
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 2.7e-68 262.7 220 63.6
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 1.3e-67 260.4 206 67.5
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 3.0e-67 259.2 199 68.3
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 8.7e-67 257.7 215 62.8
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 3.3e-66 255.8 175 74.3
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 2.8e-65 252.7 210 65.2
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 3.7e-65 252.3 223 62.8
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 3.7e-65 252.3 221 62.0
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 8.1e-65 251.1 222 61.7
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 8.1e-65 251.1 213 63.4
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.8e-64 250.0 215 64.2
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 1.8e-64 250.0 245 58.4
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 2.4e-64 249.6 226 61.9
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 3.1e-64 249.2 183 69.4
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 5.3e-64 248.4 180 71.1
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 6.9e-64 248.1 215 63.3
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 1.5e-63 246.9 225 61.3
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 2.2e-62 243.0 219 62.6
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 2.9e-62 242.7 211 64.0
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 3.8e-62 242.3 228 58.8
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 6.5e-62 241.5 211 64.0
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 6.5e-62 241.5 226 59.7
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 8.4e-62 241.1 226 58.0
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 4.2e-61 238.8 235 58.7
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 5.5e-61 238.4 226 58.8
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 7.1e-61 238.0 226 58.8
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 7.1e-61 238.0 237 59.9
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 4.6e-60 235.3 239 57.7
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.3e-59 233.8 219 61.6
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.8e-59 233.4 196 62.8
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 3.9e-59 232.3 219 58.4
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 6.7e-59 231.5 193 63.2
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 8.7e-59 231.1 231 59.3
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 1.1e-58 230.7 215 58.6
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 1.1e-58 230.7 201 61.2
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.5e-58 229.6 231 58.4
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.3e-58 229.2 221 59.3
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 4.3e-58 228.8 195 64.6
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 4.3e-58 228.8 227 55.5
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 9.6e-58 227.6 206 60.7
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.3e-57 227.3 231 58.9
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.1e-57 226.5 265 51.7
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 2.1e-57 226.5 219 61.2
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 3.7e-57 225.7 201 60.7
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 3.7e-57 225.7 229 55.0
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 3.7e-57 225.7 196 62.2
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 6.3e-57 224.9 172 66.9
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 6.3e-57 224.9 229 54.6
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.4e-56 223.8 201 60.7
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 4.1e-56 222.2 206 59.7
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 6.9e-56 221.5 217 54.8
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 6.9e-56 221.5 217 54.8
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 6.9e-56 221.5 217 54.8
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 9.0e-56 221.1 212 59.9
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 9.0e-56 221.1 193 63.2
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 1.2e-55 220.7 228 55.3
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 1.5e-55 220.3 172 66.9
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 7.6e-55 218.0 219 55.3
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 1.0e-54 217.6 178 64.0
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 1.7e-54 216.9 231 53.2
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 1.7e-54 216.9 221 54.3
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.7e-54 216.9 215 56.3
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 2.2e-54 216.5 209 56.9
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 6.5e-54 214.9 211 55.0
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 6.5e-54 214.9 228 54.8
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 2.5e-53 213.0 204 55.4
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 2.5e-53 213.0 223 52.5
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 5.5e-53 211.8 196 59.7
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 2.1e-52 209.9 162 69.1
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 2.7e-52 209.5 196 56.1
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 3.6e-52 209.1 214 54.7
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 4.6e-52 208.8 205 58.5
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 4.6e-52 208.8 216 53.7
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 3.0e-51 206.1 199 55.3
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.9e-50 203.4 194 56.7
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 6.3e-49 198.4 173 60.1
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 8.2e-49 198.0 217 52.5
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 4.2e-45 185.7 177 54.8
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 4.2e-45 185.7 182 56.0
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 7.2e-45 184.9 171 58.5
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 9.4e-45 184.5 213 49.8
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 7.9e-44 181.4 234 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 8.8e-43 177.9 179 52.5
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 4.1e-40 169.1 199 51.3
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 9.1e-40 167.9 133 63.9
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 1.3e-38 164.1 170 50.6
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 1.4e-37 160.6 135 64.4
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 2.8e-33 146.4 141 51.1
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.2e-31 141.0 104 72.1
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 1.2e-31 141.0 104 72.1
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 7.7e-31 138.3 189 42.3
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.2e-28 131.0 349 33.8
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 1.2e-26 124.4 104 66.3
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 2.6e-26 123.2 141 44.7
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.4e-16 90.9 62 74.2
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 3.5e-15 86.3 166 32.5
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.3e-09 67.8 64 54.7
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 1.2e-07 61.2 142 28.2
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 6.6e-06 55.5 71 49.3


User provided reference genes

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