Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 5.5e-95 350.9 170 100.0
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 1.2e-81 306.6 168 85.1
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 3.5e-81 305.1 170 85.3
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 5.9e-81 304.3 170 84.1
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 1.7e-80 302.8 170 83.5
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.7e-80 302.8 168 83.9
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 6.5e-80 300.8 168 83.3
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 1.1e-79 300.1 168 81.5
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.9e-79 299.3 168 82.7
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 1.9e-79 299.3 168 82.7
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 2.5e-79 298.9 170 82.4
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 3.2e-79 298.5 170 82.4
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 4.2e-79 298.1 170 81.8
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 3.6e-78 295.0 170 82.4
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 4.7e-78 294.7 168 82.1
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 6.1e-78 294.3 168 82.1
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 1.0e-77 293.5 168 82.7
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.8e-77 292.7 168 81.5
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.8e-77 292.7 168 81.5
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 1.8e-77 292.7 168 81.0
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 2.3e-77 292.4 166 81.3
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.1e-76 290.0 166 83.7
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.1e-76 290.0 161 84.5
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 1.1e-76 290.0 168 81.5
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 3.3e-76 288.5 166 81.9
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 3.3e-76 288.5 172 80.2
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 3.3e-76 288.5 174 79.9
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 4.4e-76 288.1 168 80.4
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 7.5e-76 287.3 168 81.0
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 7.5e-76 287.3 168 81.0
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 7.5e-76 287.3 169 81.1
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 7.5e-76 287.3 165 81.8
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 7.5e-76 287.3 168 78.6
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 2.8e-75 285.4 168 79.2
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.7e-75 285.0 171 78.4
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 4.8e-75 284.6 169 79.3
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 1.8e-74 282.7 174 78.2
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 2.4e-74 282.3 171 79.5
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.1e-74 282.0 171 77.8
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 4.1e-74 281.6 165 79.4
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 7.0e-74 280.8 168 77.4
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 1.2e-73 280.0 174 77.6
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 1.2e-73 280.0 169 79.9
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 1.2e-73 280.0 169 79.3
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 2.0e-73 279.3 155 84.5
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 2.0e-73 279.3 168 79.2
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 2.7e-73 278.9 166 77.7
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 4.5e-73 278.1 151 86.1
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 4.5e-73 278.1 168 79.2
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 7.7e-73 277.3 174 75.9
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 7.7e-73 277.3 161 82.6
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 7.7e-73 277.3 168 76.8
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 1.3e-72 276.6 174 75.9
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 1.7e-72 276.2 161 80.7
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 1.7e-72 276.2 168 79.2
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 2.2e-72 275.8 172 77.3
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 3.8e-72 275.0 161 82.0
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 6.5e-72 274.2 161 82.6
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 1.5e-71 273.1 176 74.4
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 1.5e-71 273.1 156 82.7
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 2.5e-71 272.3 168 76.8
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 3.2e-71 271.9 167 77.2
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 4.2e-71 271.6 174 75.3
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 5.5e-71 271.2 169 78.1
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 5.5e-71 271.2 176 74.4
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 5.5e-71 271.2 176 74.4
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.2e-70 270.0 161 80.1
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 2.1e-70 269.2 165 77.6
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.1e-70 269.2 168 78.6
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 2.7e-70 268.9 172 75.6
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 6.1e-70 267.7 176 74.4
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 8.0e-70 267.3 168 75.6
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.8e-69 266.2 168 74.4
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.8e-69 266.2 168 74.4
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 4.0e-69 265.0 155 80.0
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 5.2e-69 264.6 161 78.3
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 5.2e-69 264.6 171 72.5
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.2e-68 263.5 166 76.5
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.5e-68 263.1 165 75.2
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 2.0e-68 262.7 165 75.8
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 2.6e-68 262.3 161 75.8
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 4.4e-68 261.5 162 77.2
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.4e-68 261.5 161 76.4
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 5.7e-68 261.2 156 78.8
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 9.8e-68 260.4 161 76.4
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 1.7e-67 259.6 161 76.4
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 2.2e-67 259.2 167 76.6
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 6.3e-67 257.7 165 73.9
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.1e-66 256.9 166 71.7
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 1.4e-66 256.5 166 75.3
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.1e-66 255.4 168 74.4
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 5.4e-66 254.6 171 73.7
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 9.1e-66 253.8 156 75.0
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 1.6e-65 253.1 188 68.6
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 5.9e-65 251.1 154 76.6
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 7.7e-65 250.8 165 72.7
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 7.7e-65 250.8 154 77.3
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 1.0e-64 250.4 151 78.8
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 1.5e-63 246.5 165 71.5
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 1.9e-63 246.1 139 81.3
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 1.9e-63 246.1 139 81.3
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 3.2e-63 245.4 165 70.9
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 4.2e-63 245.0 152 75.7
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.2e-62 243.4 188 64.9
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.7e-62 242.3 165 70.3
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 3.0e-61 238.8 156 74.4
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 2.4e-58 229.2 126 84.1
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 4.1e-58 228.4 150 70.7
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 1.0e-56 223.8 179 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 5.6e-55 218.0 158 67.7
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 5.6e-55 218.0 142 74.6
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 9.5e-55 217.2 166 67.5
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 2.1e-54 216.1 141 73.8
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.8e-54 215.7 148 67.6
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 1.8e-53 213.0 134 76.1
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 5.2e-53 211.5 157 63.1
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 4.9e-51 204.9 124 76.6
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 1.8e-50 203.0 172 63.4
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 9.2e-50 200.7 112 83.9
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 2.3e-40 169.5 306 37.3
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 4.9e-35 151.8 220 43.6
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 4.1e-34 148.7 202 43.1
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.3e-27 127.1 76 76.3
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.7e-27 126.7 80 72.5
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.4e-27 124.8 84 72.6
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 8.6e-24 114.4 66 80.3
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 2.0e-20 103.2 55 80.0
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 3.6e-14 82.4 44 77.3
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 9.0e-13 77.8 66 53.0
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 6.4e-11 71.6 88 43.2
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.1e-10 70.9 119 37.8
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 1.8e-08 63.5 44 65.9
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.5e-07 60.5 82 45.1


User provided reference genes

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