Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.4e-111 406.4 210 100.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.9e-85 318.9 207 79.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 5.4e-84 314.7 209 76.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 7.8e-83 310.8 200 81.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.0e-82 310.5 193 81.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.0e-82 308.9 208 76.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.9e-82 308.5 212 77.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 8.6e-82 307.4 209 73.2
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.5e-81 306.6 199 76.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.9e-81 306.2 206 77.2
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.5e-81 305.8 207 77.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.3e-81 305.4 211 73.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 7.3e-81 304.3 199 78.9
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.3e-81 304.3 198 79.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.5e-81 303.9 203 75.9
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.5e-81 303.9 200 79.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.2e-80 303.5 207 76.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.6e-80 303.1 207 74.4
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.1e-80 302.8 209 76.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.8e-80 302.4 198 79.3
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.8e-80 302.4 210 74.3
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 8.0e-80 300.8 210 77.1
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-79 300.4 198 78.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.1e-79 300.4 210 73.8
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-79 300.4 201 75.6
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.8e-79 299.7 211 72.0
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 5.2e-79 298.1 210 75.2
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.2e-79 298.1 208 76.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 6.8e-79 297.7 201 76.6
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 6.8e-79 297.7 200 74.0
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.9e-79 297.4 200 76.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-78 296.6 181 77.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.5e-78 296.6 209 72.7
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.6e-78 295.8 200 75.5
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.4e-78 295.4 210 74.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 7.5e-78 294.3 209 72.2
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.5e-78 294.3 206 72.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 9.8e-78 293.9 208 74.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.3e-77 293.5 200 75.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.2e-77 292.7 209 71.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-77 292.7 195 75.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.9e-77 292.4 200 76.5
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.9e-77 291.6 205 74.6
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.9e-77 291.6 208 71.2
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 6.4e-77 291.2 211 73.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.3e-77 290.8 195 75.4
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.9e-76 289.7 205 74.1
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.9e-76 289.7 205 74.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-76 289.7 197 74.6
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.9e-76 289.7 211 73.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.4e-76 289.3 207 72.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.4e-76 289.3 201 73.1
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.2e-76 288.9 198 72.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.1e-76 288.5 207 72.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 5.4e-76 288.1 214 72.9
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 5.4e-76 288.1 196 73.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 9.2e-76 287.3 204 75.5
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-75 286.6 198 74.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.1e-75 286.2 210 70.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 3.5e-75 285.4 198 73.2
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.0e-74 283.9 208 70.7
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.3e-74 282.7 201 74.6
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 8.6e-74 280.8 210 71.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.1e-73 280.4 201 72.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-73 280.4 225 66.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.1e-73 280.4 206 72.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.5e-73 280.0 199 71.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.5e-73 279.3 207 71.5
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 7.3e-73 277.7 195 69.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.2e-72 276.9 158 85.4
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.1e-72 276.2 208 71.2
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.6e-72 275.4 200 71.5
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.6e-72 275.4 207 70.0
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.6e-72 275.4 207 69.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.2e-72 274.6 187 73.8
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.2e-72 274.6 207 69.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.4e-71 273.5 198 72.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.8e-71 273.1 190 72.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.3e-71 272.7 208 70.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 3.1e-71 272.3 209 68.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.0e-71 271.9 161 82.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.0e-71 271.9 206 71.4
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 4.0e-71 271.9 207 68.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.0e-71 271.9 185 73.0
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.2e-71 271.6 295 53.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.9e-71 270.8 206 71.4
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.2e-70 270.4 201 71.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-70 270.0 207 67.6
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.0e-70 269.6 196 71.4
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.6e-70 269.2 198 69.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.4e-70 268.9 206 70.9
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 5.8e-70 268.1 208 68.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.8e-70 268.1 204 67.6
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.5e-70 267.7 206 68.0
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.5e-70 267.7 206 70.4
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 204 67.6
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.2e-69 266.2 214 68.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.7e-69 265.4 208 67.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.7e-69 265.4 198 66.7
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 4.9e-69 265.0 214 67.8
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.4e-69 264.6 196 69.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 8.3e-69 264.2 204 67.2
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.1e-68 263.8 195 68.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.9e-68 263.1 204 68.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.4e-68 262.7 212 67.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.1e-68 261.2 160 81.9
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 7.1e-68 261.2 224 65.2
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.2e-67 260.4 202 67.8
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.2e-67 260.4 196 69.4
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 3.9e-66 255.4 205 65.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.6e-66 254.2 169 73.4
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.5e-65 253.4 202 64.4
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.9e-65 253.1 198 64.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 3.3e-65 252.3 173 75.1
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.6e-65 251.5 178 70.2
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.4e-63 246.9 173 73.4
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-63 245.4 168 74.4
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.5e-62 243.4 208 64.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.4e-62 242.3 189 67.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 4.9e-61 238.4 180 67.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 7.8e-59 231.1 170 74.7
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.3e-57 225.7 200 65.5
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.6e-56 223.4 198 63.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.7e-53 213.4 194 58.8
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 8.4e-53 211.1 124 83.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.9e-52 209.9 126 81.7
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.0e-50 202.6 126 79.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.5e-46 190.3 199 53.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.0e-46 189.9 170 55.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-46 189.9 154 65.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.0e-46 189.9 121 76.9
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.6e-46 189.5 170 55.3
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.9e-44 183.3 150 59.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.6e-43 180.3 195 56.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.0e-42 176.0 97 84.5
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.0e-42 176.0 103 82.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-40 169.5 202 51.5
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.1e-39 167.5 104 81.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.2e-37 159.8 169 50.9
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 180 48.3
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.2e-36 155.6 149 52.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.3e-32 144.1 102 71.6
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.4e-31 139.8 171 49.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 2.5e-20 103.2 78 62.8
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.2e-20 102.4 108 55.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.4e-18 97.4 79 59.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.8e-18 97.1 55 78.2
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 3.0e-18 96.3 67 67.2
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.5e-17 94.0 155 39.4
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.4e-17 91.7 210 33.8
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.6e-14 83.2 205 32.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.6e-11 73.9 93 45.2
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.1e-11 73.6 40 90.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.1e-11 73.6 46 78.3
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.4e-10 70.9 56 64.3
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.2e-06 57.8 38 65.8


User provided reference genes

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