Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 8.6e-68 260.4 149 100.0
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 2.4e-25 119.4 58 89.7
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 3.1e-25 119.0 65 76.9
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 5.2e-25 118.2 70 77.1
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 5.2e-25 118.2 58 87.9
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 5.2e-25 118.2 58 87.9
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 6.9e-25 117.9 70 77.1
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 9.0e-25 117.5 69 73.9
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 9.0e-25 117.5 67 77.6
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 2.0e-24 116.3 57 87.7
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 2.6e-24 115.9 59 84.7
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 3.4e-24 115.5 74 70.3
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 3.4e-24 115.5 57 87.7
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 4.4e-24 115.2 65 75.4
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 4.4e-24 115.2 57 86.0
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 4.4e-24 115.2 57 86.0
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 7.6e-24 114.4 79 65.8
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 7.6e-24 114.4 57 86.0
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 9.9e-24 114.0 58 84.5
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 9.9e-24 114.0 85 62.4
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 9.9e-24 114.0 57 84.2
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 1.3e-23 113.6 58 82.8
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 1.3e-23 113.6 71 70.4
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 1.3e-23 113.6 64 76.6
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 1.3e-23 113.6 65 73.8
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 1.3e-23 113.6 70 67.1
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 1.7e-23 113.2 57 86.0
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 1.7e-23 113.2 59 78.0
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 1.7e-23 113.2 67 73.1
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 1.7e-23 113.2 75 66.7
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 2.2e-23 112.8 57 84.2
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 2.9e-23 112.5 70 72.9
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 2.9e-23 112.5 82 67.1
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 2.9e-23 112.5 58 82.8
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 2.9e-23 112.5 73 71.2
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 3.8e-23 112.1 85 60.0
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 3.8e-23 112.1 65 75.4
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 3.8e-23 112.1 127 50.4
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 4.9e-23 111.7 64 76.6
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 4.9e-23 111.7 77 67.5
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 4.9e-23 111.7 77 67.5
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 4.9e-23 111.7 59 81.4
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 4.9e-23 111.7 71 69.0
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 6.4e-23 111.3 58 82.8
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 6.4e-23 111.3 58 82.8
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 6.4e-23 111.3 129 46.5
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 6.4e-23 111.3 71 73.2
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 8.4e-23 110.9 64 76.6
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 8.4e-23 110.9 67 73.1
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 8.4e-23 110.9 85 63.5
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 1.1e-22 110.5 69 65.2
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 1.4e-22 110.2 69 72.5
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 1.9e-22 109.8 69 73.9
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 1.9e-22 109.8 86 65.1
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 1.9e-22 109.8 75 64.0
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 1.9e-22 109.8 59 81.4
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.4e-22 109.4 76 68.4
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 2.4e-22 109.4 61 77.0
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 2.4e-22 109.4 71 69.0
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 3.2e-22 109.0 79 63.3
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 3.2e-22 109.0 74 67.6
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 3.2e-22 109.0 71 70.4
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 4.2e-22 108.6 65 70.8
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 5.4e-22 108.2 57 78.9
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 5.4e-22 108.2 74 64.9
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 7.1e-22 107.8 57 80.7
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 7.1e-22 107.8 69 76.8
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 7.1e-22 107.8 58 79.3
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 7.1e-22 107.8 69 71.0
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 7.1e-22 107.8 57 82.5
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 9.3e-22 107.5 57 82.5
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 9.3e-22 107.5 72 68.1
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 9.3e-22 107.5 70 70.0
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 9.3e-22 107.5 63 73.0
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 9.3e-22 107.5 61 75.4
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.2e-21 107.1 69 72.5
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.2e-21 107.1 69 72.5
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 1.2e-21 107.1 71 67.6
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 1.2e-21 107.1 75 64.0
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 1.2e-21 107.1 67 68.7
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 1.2e-21 107.1 61 75.4
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 1.6e-21 106.7 64 70.3
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 1.6e-21 106.7 57 82.5
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.7e-21 105.9 57 80.7
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 3.5e-21 105.5 57 80.7
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 4.6e-21 105.1 70 68.6
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 4.6e-21 105.1 68 70.6
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 6.0e-21 104.8 57 80.7
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 6.0e-21 104.8 57 80.7
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 1.7e-20 103.2 73 63.0
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.7e-20 103.2 57 77.2
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 2.3e-20 102.8 57 78.9
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 5.1e-20 101.7 69 68.1
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 1.1e-19 100.5 57 77.2
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 1.1e-19 100.5 64 64.1
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 1.5e-19 100.1 66 63.6
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 4.3e-19 98.6 66 66.7
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 5.6e-19 98.2 57 73.7
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 4.8e-18 95.1 129 41.9
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 8.1e-18 94.4 54 75.9
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 1.4e-17 93.6 77 58.4
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 3.1e-17 92.4 72 51.4
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 1.5e-16 90.1 60 56.7
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 2.9e-15 85.9 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 6.4e-15 84.7 58 58.6
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 6.4e-15 84.7 59 57.6
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 4.2e-14 82.0 57 61.4
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 5.4e-14 81.6 57 61.4
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 2.3e-12 76.3 69 53.6
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 8.7e-12 74.3 62 58.1
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 1.5e-11 73.6 40 80.0
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 9.6e-11 70.9 90 42.2
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 3.7e-10 68.9 56 50.0
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 7.1e-06 54.7 63 49.2


User provided reference genes

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