Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 1.6e-103 379.4 194 100.0
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 3.6e-42 175.6 117 72.6
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.6e-42 175.6 201 56.2
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 3.1e-41 172.6 115 76.5
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.1e-41 172.6 201 55.2
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 2.0e-40 169.9 130 68.5
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 2.0e-40 169.9 148 64.2
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 2.6e-40 169.5 202 51.5
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 3.4e-40 169.1 146 65.8
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 4.4e-40 168.7 195 52.3
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 4.4e-40 168.7 172 58.1
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 9.8e-40 167.5 129 68.2
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 9.8e-40 167.5 136 64.0
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 9.8e-40 167.5 136 64.0
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.3e-39 167.2 179 53.6
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 1.3e-39 167.2 193 51.8
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 1.7e-39 166.8 198 51.5
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 1.7e-39 166.8 199 50.3
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 4.9e-39 165.2 178 52.2
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 8.3e-39 164.5 159 57.2
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 1.1e-38 164.1 194 50.5
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 1.1e-38 164.1 199 50.8
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 1.4e-38 163.7 124 66.9
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 1.9e-38 163.3 113 71.7
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 1.9e-38 163.3 133 64.7
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 1.9e-38 163.3 112 72.3
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.4e-38 162.9 192 52.1
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 5.4e-38 161.8 191 52.4
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 5.4e-38 161.8 194 53.1
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 5.4e-38 161.8 123 66.7
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 5.4e-38 161.8 123 65.9
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 7.0e-38 161.4 118 66.9
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 7.0e-38 161.4 198 50.5
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 9.2e-38 161.0 199 50.3
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 2.0e-37 159.8 167 54.5
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 2.7e-37 159.5 116 71.6
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 2.7e-37 159.5 116 68.1
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 4.6e-37 158.7 178 54.5
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 6.0e-37 158.3 122 66.4
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 7.8e-37 157.9 204 47.5
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.0e-36 157.5 148 58.8
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.0e-36 157.5 172 53.5
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 1.0e-36 157.5 199 47.7
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 1.0e-36 157.5 176 51.7
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 3.0e-36 156.0 194 49.5
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 3.0e-36 156.0 179 52.0
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 3.0e-36 156.0 110 70.0
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 3.0e-36 156.0 187 50.3
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 3.9e-36 155.6 111 67.6
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 5.0e-36 155.2 104 71.2
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 5.0e-36 155.2 126 61.1
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 5.0e-36 155.2 111 66.7
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 6.6e-36 154.8 137 59.9
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 8.6e-36 154.5 195 47.2
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.9e-35 153.3 169 54.4
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 5.6e-35 151.8 175 50.9
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 5.6e-35 151.8 111 64.9
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 1.6e-34 150.2 127 61.4
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 2.8e-34 149.4 112 63.4
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 6.2e-34 148.3 111 64.9
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 6.2e-34 148.3 97 71.1
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 8.1e-34 147.9 132 57.6
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 1.1e-33 147.5 132 57.6
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 1.1e-33 147.5 132 57.6
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 1.1e-33 147.5 105 70.5
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 1.4e-33 147.1 125 60.0
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 1.8e-33 146.7 187 46.5
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 1.8e-33 146.7 204 44.1
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 4.0e-33 145.6 195 46.7
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 4.0e-33 145.6 100 72.0
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 4.0e-33 145.6 111 64.9
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 5.2e-33 145.2 132 56.8
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 5.2e-33 145.2 195 47.7
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 6.8e-33 144.8 154 51.9
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 6.8e-33 144.8 195 47.2
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 1.5e-32 143.7 174 47.7
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 4.4e-32 142.1 116 61.2
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 4.4e-32 142.1 169 51.5
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 4.4e-32 142.1 169 51.5
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 9.8e-32 141.0 158 47.5
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 1.3e-31 140.6 111 61.3
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 1.7e-31 140.2 201 45.8
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 2.2e-31 139.8 195 45.1
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 3.7e-31 139.0 97 66.0
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 4.1e-30 135.6 102 63.7
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 7.8e-29 131.3 147 49.7
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 2.8e-26 122.9 147 49.7
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 3.6e-26 122.5 116 59.5
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 6.2e-26 121.7 129 50.4
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 8.1e-26 121.3 175 44.6
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 1.1e-25 120.9 91 69.2
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 1.4e-25 120.6 103 59.2
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 1.8e-25 120.2 150 45.3
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 1.2e-24 117.5 81 70.4
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 1.7e-23 113.6 72 75.0
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 2.7e-21 106.3 103 53.4
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 4.6e-21 105.5 87 57.5
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 1.0e-20 104.4 75 65.3
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 2.3e-20 103.2 108 46.3
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 1.9e-19 100.1 114 43.0
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 2.1e-18 96.7 98 55.1
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 4.4e-16 89.0 64 62.5
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-15 86.3 87 47.1
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 3.9e-12 75.9 189 34.9
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 2.4e-09 66.6 99 44.4
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 9.9e-08 61.2 30 90.0


User provided reference genes

Program Settings