Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.1e-189 665.6 362 100.0
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.0e-90 336.3 363 63.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-89 334.0 385 55.6
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 7.3e-89 331.6 361 60.1
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.6e-88 329.3 378 55.6
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.2e-88 328.6 380 54.5
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.4e-87 326.6 377 56.0
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.0e-87 325.9 361 59.8
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 6.9e-87 325.1 342 59.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.2e-86 324.3 371 56.3
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.9e-84 317.0 346 57.5
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-84 315.1 382 52.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.1e-84 315.1 311 58.5
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 9.3e-84 314.7 371 58.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 6.0e-83 312.0 367 53.4
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.0e-82 309.7 366 57.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.6e-81 305.4 369 52.3
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 9.6e-81 304.7 370 55.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.7e-80 302.8 367 53.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.4e-79 300.8 368 52.4
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.8e-79 300.4 372 52.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.2e-78 297.7 371 52.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.0e-78 297.0 361 52.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.3e-77 294.3 357 51.3
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.9e-77 293.1 371 52.3
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.9e-77 292.4 373 52.3
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 8.4e-77 291.6 364 51.6
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 8.4e-77 291.6 361 51.5
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.4e-76 290.8 358 50.8
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 3.2e-76 289.7 367 51.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 5.5e-76 288.9 381 50.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.1e-76 288.5 371 50.7
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.1e-75 287.0 347 53.3
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.5e-75 286.2 347 52.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.0e-75 285.4 373 53.4
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 7.9e-75 285.0 357 50.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.5e-73 280.8 340 52.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.9e-73 280.4 370 50.3
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.3e-73 279.6 370 49.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.1e-72 276.9 352 50.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.8e-71 273.9 362 49.7
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-71 273.9 352 50.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.4e-71 273.5 378 49.5
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.1e-71 273.1 368 50.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 6.9e-71 271.9 311 56.6
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-70 271.2 336 52.4
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.5e-70 270.8 357 49.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-70 269.6 322 54.0
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.4e-70 269.6 379 47.2
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.3e-69 267.7 367 49.3
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.7e-69 267.3 342 52.6
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.7e-69 267.3 375 48.8
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.7e-69 267.3 367 50.1
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.2e-69 266.9 349 50.4
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.2e-69 266.9 352 49.7
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.8e-69 266.2 349 50.4
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 3.8e-69 266.2 374 47.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.9e-69 265.8 277 58.1
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 8.4e-69 265.0 365 51.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.9e-68 263.8 347 56.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.5e-68 263.5 349 49.9
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-68 263.5 303 57.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.2e-68 262.7 365 51.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 2.1e-67 260.4 328 50.6
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.5e-67 259.6 378 46.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.6e-67 259.2 374 47.1
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 6.0e-67 258.8 344 52.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 7.9e-67 258.5 291 55.7
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.3e-66 256.9 329 48.9
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-65 254.6 345 51.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.9e-65 253.8 339 49.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.5e-65 253.4 386 47.9
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.2e-64 250.4 327 54.4
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 4.8e-64 249.2 321 51.7
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 4.8e-64 249.2 336 51.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.4e-63 246.9 336 51.2
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.9e-62 242.3 343 49.9
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.0e-61 241.5 343 50.1
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-61 239.6 370 47.6
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-60 237.7 333 46.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.4e-60 237.7 379 48.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.2e-60 236.1 363 48.5
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 7.2e-60 235.3 372 47.0
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 9.3e-60 235.0 345 48.7
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 3.6e-59 233.0 334 46.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 3.6e-59 233.0 367 47.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 4.6e-59 232.6 343 48.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 7.9e-59 231.9 372 45.2
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 7.9e-59 231.9 334 43.7
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.3e-58 230.3 368 45.4
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.7e-58 228.8 295 50.8
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.7e-57 225.7 303 49.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.7e-56 224.2 368 45.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.7e-56 223.0 302 54.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.8e-56 222.6 377 46.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.3e-56 222.2 366 45.4
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.2e-54 218.0 357 40.9
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.3e-53 214.5 321 45.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.2e-53 213.8 322 46.9
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.2e-53 213.8 371 41.8
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.8e-53 213.0 324 46.6
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.2e-52 209.9 328 46.3
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 7.2e-52 208.8 364 44.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 7.2e-52 208.8 325 46.5
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 9.4e-52 208.4 349 45.0
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-51 208.0 272 52.2
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-51 208.0 272 52.2
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.7e-51 206.1 350 44.6
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-50 204.9 261 52.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.3e-50 203.8 349 44.7
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.3e-50 203.8 349 44.7
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.3e-50 203.8 349 44.7
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.5e-49 201.1 259 53.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.3e-48 198.0 372 40.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.7e-48 196.4 380 43.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.0e-45 188.3 328 42.1
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.3e-45 188.0 288 46.2
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.2e-44 183.0 375 43.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 4.7e-43 179.5 292 42.5
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.8e-42 177.6 175 59.4
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.7e-42 175.6 367 39.0
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.1e-39 166.4 370 38.4
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.0e-37 161.8 153 58.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.8e-34 151.0 297 40.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.2e-33 148.3 387 36.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-31 141.4 205 51.2
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-31 141.4 205 51.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 4.1e-31 139.8 236 45.3
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.1e-31 139.8 381 34.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 5.3e-31 139.4 380 35.5
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-29 132.9 217 47.5
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 7.2e-28 129.0 129 61.2
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.1e-27 127.5 123 63.4
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.4e-25 119.8 300 37.0
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.8e-23 114.4 105 58.1
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 2.0e-22 110.9 180 43.3
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 8.6e-21 105.5 260 36.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-20 103.2 206 42.2
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.5e-20 102.8 206 42.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.5e-20 102.8 206 42.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-19 101.7 206 41.7
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-19 101.3 206 41.7
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.0e-19 99.0 108 53.7
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.0e-19 99.0 205 41.0
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 7.8e-14 82.4 71 66.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.0e-13 82.0 105 51.4
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-13 80.9 161 42.2
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 2.6e-09 67.4 170 31.2
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 6.4e-08 62.8 76 52.6
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 4.1e-07 60.1 74 54.1
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.2e-06 58.5 117 41.9


User provided reference genes

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