Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009610 Simmondsia chinensis HOM05D001966 ORTHO05D011119 7.3e-33 143.3 71 100.0
arahy.Tifrunner.gnm1.ann1.1DF8CR Arachis hypogaea HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 6.2e-16 87.0 42 97.6
arahy.Tifrunner.gnm1.ann1.FF8QKQ Arachis hypogaea HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
BcaNung07086 Brassica carinata HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
Cfa023003 Carpinus fangiana HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
Gohir.1Z049692 Gossypium hirsutum HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
Gohir.1Z050866 Gossypium hirsutum HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
ScUNg0000270 Simmondsia chinensis HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 6.2e-16 87.0 42 97.6
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 6.2e-16 87.0 42 97.6
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 2.3e-15 85.1 42 95.2
Hma1.2p1_0051F.1_g029255 Hydrangea macrophylla HOM05D001966 ORTHO05D011119 4.0e-15 84.3 42 95.2
arahy.Tifrunner.gnm1.ann1.KXW2A6 Arachis hypogaea HOM05D001966 ORTHO05D011119 5.2e-15 84.0 42 95.2
Gohir.A01G119800 Gossypium hirsutum HOM05D001966 ORTHO05D011119 5.2e-15 84.0 42 95.2
arahy.Tifrunner.gnm1.ann1.KT8FLV Arachis hypogaea HOM05D001966 ORTHO05D011119 1.5e-14 82.4 42 92.9
Gorai.007G237900 Gossypium raimondii HOM05D001966 ORTHO05D011119 2.0e-14 82.0 42 92.9
Potri.011G074067 Populus trichocarpa HOM05D001966 ORTHO05D011119 2.6e-14 81.6 42 92.9
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.6e-14 81.6 42 90.5
Gohir.A10G178000 Gossypium hirsutum HOM05D001966 ORTHO05D011119 4.4e-14 80.9 42 90.5
arahy.Tifrunner.gnm1.ann1.2KV113 Arachis hypogaea HOM05D000580 ORTHO05D011119 9.9e-14 79.7 42 90.5
Gohir.D02G156751 Gossypium hirsutum HOM05D001966 ORTHO05D011119 2.2e-13 78.6 41 92.7
arahy.Tifrunner.gnm1.ann1.CV40CV Arachis hypogaea HOM05D001966 ORTHO05D010127 2.9e-13 78.2 41 92.7
Phvul.001G037800 Phaseolus vulgaris HOM05D001966 ORTHO05D011119 2.9e-13 78.2 42 88.1
SEGI_31611 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 3.7e-13 77.8 42 90.5
Gorai.005G175800 Gossypium raimondii HOM05D001966 ORTHO05D011119 1.9e-12 75.5 41 90.2
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 4.1e-12 74.3 60 65.0
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 4.1e-12 74.3 41 90.2
Gohir.A05G366050 Gossypium hirsutum HOM05D001966 ORTHO05D011119 5.4e-12 73.9 42 83.3
Gohir.D05G230250 Gossypium hirsutum HOM05D001966 ORTHO05D011119 1.2e-11 72.8 42 78.6
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 1.2e-11 72.8 42 78.6
arahy.Tifrunner.gnm1.ann1.MHEL4J Arachis hypogaea HOM05D001966 ORTHO05D011119 6.0e-11 70.5 40 92.5
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.0e-11 70.5 40 90.0
arahy.Tifrunner.gnm1.ann1.VLT00F Arachis hypogaea HOM05D001966 ORTHO05D011119 2.3e-10 68.6 36 91.7
Glyma.11G218300 Glycine max HOM05D001966 ORTHO05D011119 2.5e-09 65.1 52 69.2
Oeu012760.1 Olea europaea HOM05D001966 ORTHO05D010127 7.3e-09 63.5 41 75.6
SEGI_24666 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 2.1e-08 62.0 41 78.0
Nitab4.5_0000289g0040 Nicotiana tabacum HOM05D001966 ORTHO05D011119 2.8e-08 61.6 33 84.8
Sopen04g018020 Solanum pennellii HOM05D001966 ORTHO05D011119 2.4e-07 58.5 35 85.7
Manes.13G063850 Manihot esculenta HOM05D001966 ORTHO05D011119 4.0e-07 57.8 43 69.8
ECA246G3863 Erigeron canadensis HOM05D002697 ORTHO05D003087 1.2e-06 56.2 28 89.3
Gohir.A04G110920 Gossypium hirsutum HOM05D001966 ORTHO05D011119 4.4e-06 54.3 41 65.9
Gohir.A04G110980 Gossypium hirsutum HOM05D001966 ORTHO05D011119 4.4e-06 54.3 41 65.9


User provided reference genes

Program Settings