Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 7.3e-92 340.5 168 100.0
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 1.0e-64 250.4 166 74.7
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 1.9e-63 246.1 165 75.2
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 2.7e-62 242.3 168 73.2
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 6.1e-62 241.1 167 73.1
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 3.0e-61 238.8 167 70.1
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 5.1e-61 238.0 168 72.0
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 8.7e-61 237.3 169 72.8
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 3.3e-60 235.3 166 71.7
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 5.7e-60 234.6 185 65.4
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 5.7e-60 234.6 185 66.5
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 5.7e-60 234.6 140 78.6
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 7.4e-60 234.2 170 70.6
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 3.7e-59 231.9 168 70.8
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 6.3e-59 231.1 174 67.8
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.1e-58 230.3 175 70.9
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 1.1e-58 230.3 166 71.1
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 3.1e-58 228.8 175 70.9
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 3.1e-58 228.8 163 71.8
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 4.1e-58 228.4 168 68.5
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 6.9e-58 227.6 139 77.0
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 6.9e-58 227.6 139 77.0
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 6.9e-58 227.6 138 79.7
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 1.5e-57 226.5 141 75.2
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.0e-57 226.1 159 73.0
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.0e-56 223.8 157 70.1
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 1.0e-56 223.8 168 69.6
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 1.7e-56 223.0 172 69.2
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 2.9e-56 222.2 141 76.6
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 2.9e-56 222.2 135 80.0
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 6.5e-56 221.1 142 76.1
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 1.9e-55 219.5 157 68.8
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.2e-55 218.8 158 71.5
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 5.5e-55 218.0 153 71.2
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 5.5e-55 218.0 167 65.9
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 5.5e-55 218.0 165 65.5
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 3.6e-54 215.3 172 68.6
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 1.8e-53 213.0 121 83.5
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 3.0e-53 212.2 157 70.7
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 3.0e-53 212.2 157 70.7
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 3.9e-53 211.8 156 69.2
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 5.1e-53 211.5 172 63.4
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 6.7e-53 211.1 135 74.1
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 6.7e-53 211.1 169 65.1
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 8.8e-53 210.7 157 70.1
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 8.8e-53 210.7 157 70.1
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 8.8e-53 210.7 157 70.1
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 8.8e-53 210.7 169 63.9
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 8.8e-53 210.7 138 73.2
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 2.0e-52 209.5 197 59.9
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 4.3e-52 208.4 133 75.2
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 4.3e-52 208.4 165 65.5
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 5.7e-52 208.0 141 71.6
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 9.7e-52 207.2 150 68.7
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 9.7e-52 207.2 135 74.1
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 9.7e-52 207.2 120 81.7
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 1.7e-51 206.5 228 54.4
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 2.8e-51 205.7 158 67.7
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 3.7e-51 205.3 133 73.7
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 4.8e-51 204.9 171 61.4
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 6.3e-51 204.5 128 76.6
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 8.2e-51 204.1 136 72.8
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.1e-50 203.8 134 72.4
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 5.3e-50 201.4 121 79.3
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 1.2e-49 200.3 150 70.7
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 1.5e-49 199.9 121 79.3
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 2.6e-49 199.1 166 63.3
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 7.7e-49 197.6 197 55.8
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 1.3e-48 196.8 134 69.4
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 3.8e-48 195.3 125 72.8
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 5.0e-48 194.9 122 76.2
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 8.5e-48 194.1 123 77.2
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 1.9e-47 193.0 165 61.8
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 1.6e-46 189.9 153 61.4
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 7.9e-46 187.6 144 67.4
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.1e-45 184.9 124 71.8
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 7.4e-44 181.0 120 70.8
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 1.7e-43 179.9 160 61.2
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 4.8e-43 178.3 146 61.0
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.1e-42 177.2 137 64.2
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 2.4e-42 176.0 166 57.2
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 4.1e-42 175.3 127 67.7
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 3.5e-41 172.2 120 65.8
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 1.2e-38 163.7 118 61.0
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 8.8e-37 157.5 133 60.2
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 1.7e-35 153.3 120 65.8
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 2.8e-35 152.5 102 73.5
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 3.7e-35 152.1 117 65.8
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 1.6e-33 146.7 86 80.2
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 2.5e-31 139.4 108 64.8
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 3.2e-31 139.0 116 60.3
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 1.8e-29 133.3 87 72.4
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 4.0e-29 132.1 161 48.4
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.8e-27 125.2 159 48.4
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 6.3e-27 124.8 110 58.2
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 8.5e-24 114.4 89 64.0
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 5.5e-23 111.7 85 67.1
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 8.3e-19 97.8 140 40.7
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 1.1e-15 87.4 46 89.1
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.5e-15 87.0 70 64.3
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.1e-14 83.2 123 39.0
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 1.4e-13 80.5 123 39.8
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.5e-12 77.0 40 87.5
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 2.0e-12 76.6 68 57.4
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 2.2e-11 73.2 48 68.8
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 2.2e-11 73.2 149 31.5
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 6.4e-11 71.6 119 33.6
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 2.3e-08 63.2 39 69.2
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 6.6e-08 61.6 127 31.5
HPP92_027275 Vanilla planifolia HOM05D007052 ORTHO05D008871 2.1e-06 56.6 42 61.9
MCO14G271 Micromonas commoda HOM05D007052 ORTHO05D008871 8.0e-06 54.7 118 30.5


User provided reference genes

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