Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009200 Simmondsia chinensis HOM05D001172 ORTHO05D001128 7.9e-58 226.9 113 100.0
Sc05g0009900 Simmondsia chinensis HOM05D001172 ORTHO05D001128 6.1e-50 200.7 96 100.0
Ah.09g234940 Amaranthus hybridus HOM05D001172 ORTHO05D001128 5.4e-22 107.8 98 57.1
EL10Ac8g20051 Beta vulgaris HOM05D001172 ORTHO05D001128 7.0e-22 107.5 98 56.1
Ah.14g088030 Amaranthus hybridus HOM05D001172 ORTHO05D001128 1.1e-19 100.1 99 55.6
TAR626G0297 Trochodendron aralioides HOM05D001172 ORTHO05D001128 7.3e-19 97.4 96 55.2
AUR62021956 Chenopodium quinoa HOM05D001172 ORTHO05D001128 2.8e-18 95.5 100 56.0
AUR62012703 Chenopodium quinoa HOM05D001172 ORTHO05D001128 3.6e-18 95.1 98 54.1
AUR62044528 Chenopodium quinoa HOM05D001172 ORTHO05D001128 4.7e-18 94.7 98 57.1
Migut.M01766 Erythranthe guttata HOM05D001172 ORTHO05D001128 2.3e-17 92.4 96 53.1
Oeu007579.1 Olea europaea HOM05D001172 ORTHO05D001128 2.3e-17 92.4 96 57.3
Hund23471 Selenicereus undatus HOM05D001172 ORTHO05D001128 3.1e-17 92.0 102 54.9
Nitab4.5_0010106g0010 Nicotiana tabacum HOM05D001172 ORTHO05D001128 5.2e-17 91.3 96 54.2
Peaxi162Scf01097g00415 Petunia axillaris HOM05D001172 ORTHO05D001128 1.2e-16 90.1 96 53.1
PGSC0003DMG400027871 Solanum tuberosum HOM05D001172 ORTHO05D001128 1.5e-16 89.7 96 52.1
Hund21407 Selenicereus undatus HOM05D001172 ORTHO05D001128 2.0e-16 89.4 99 51.5
Eucgr.F00762 Eucalyptus grandis HOM05D001172 ORTHO05D001128 2.6e-16 89.0 95 51.6
Nn6g33559 Nelumbo nucifera HOM05D001172 ORTHO05D001128 2.6e-16 89.0 91 57.1
Nitab4.5_0000981g0070 Nicotiana tabacum HOM05D001172 ORTHO05D001128 2.6e-16 89.0 96 53.1
MSTRG.6919 Avicennia marina HOM05D001172 ORTHO05D001128 3.4e-16 88.6 96 55.2
MBI18_g14469_MAGBIO Magnolia biondii HOM05D001172 ORTHO05D001128 3.4e-16 88.6 94 50.0
Nn1g00140 Nelumbo nucifera HOM05D001172 ORTHO05D001128 4.4e-16 88.2 91 56.0
Solyc12g005020.2 Solanum lycopersicum HOM05D001172 ORTHO05D001128 2.2e-15 85.9 96 50.0
Sopen12g001030 Solanum pennellii HOM05D001172 ORTHO05D001128 2.2e-15 85.9 96 49.0
PGR083G1571 Punica granatum HOM05D001172 ORTHO05D001128 2.9e-15 85.5 96 44.8
PSO541G4348 Papaver somniferum HOM05D001172 ORTHO05D001128 6.4e-15 84.3 96 49.0
PSO675G0002 Papaver somniferum HOM05D001172 ORTHO05D001128 1.4e-14 83.2 96 47.9
MD11G1217700 Malus domestica HOM05D001172 ORTHO05D001128 3.2e-14 82.0 96 44.8
MD03G1200700 Malus domestica HOM05D001172 ORTHO05D001128 4.1e-14 81.6 97 45.4
Prupe.4G213600 Prunus persica HOM05D001172 ORTHO05D001128 5.4e-14 81.3 96 46.9
Cc05_g13670 Coffea canephora HOM05D001172 ORTHO05D001128 7.0e-14 80.9 95 51.6
Dinv40755 Davidia involucrata HOM05D001172 ORTHO05D001128 9.2e-14 80.5 97 51.5
Oeu042767.1 Olea europaea HOM05D001172 ORTHO05D001128 9.2e-14 80.5 89 52.8
CDE05G0695 Ceratophyllum demersum HOM05D001172 ORTHO05D001128 1.2e-13 80.1 94 45.7
Oeu005528.1 Olea europaea HOM05D001172 ORTHO05D001128 1.2e-13 80.1 96 50.0
Rhsim06G0217200 Rhododendron simsii HOM05D001172 ORTHO05D001128 1.6e-13 79.7 104 45.2
Sabra16G0289900 Salix brachista HOM05D001172 ORTHO05D001128 1.6e-13 79.7 95 47.4
SGA_v2.0_scaffold172G38998 Striga asiatica HOM05D001172 ORTHO05D001128 1.6e-13 79.7 93 47.3
CDE02G4161 Ceratophyllum demersum HOM05D000355 ORTHO05D000227 2.0e-13 79.3 94 43.6
DCAR_016706 Daucus carota HOM05D001172 ORTHO05D001128 2.0e-13 79.3 95 44.2
Dinv22261 Davidia involucrata HOM05D001172 ORTHO05D001128 2.0e-13 79.3 96 47.9
Manes.15G071700 Manihot esculenta HOM05D001172 ORTHO05D001128 2.0e-13 79.3 95 50.5
Aqoxy1G02163 Aquilegia oxysepala HOM05D001172 ORTHO05D001128 2.7e-13 79.0 96 49.0
Potri.001G435800 Populus trichocarpa HOM05D001172 ORTHO05D001128 2.7e-13 79.0 95 46.3
MSTRG.15148 Avicennia marina HOM05D001172 ORTHO05D001128 3.5e-13 78.6 98 49.0
Ciclev10009352m.g Citrus clementina HOM05D001172 ORTHO05D001128 3.5e-13 78.6 96 45.8
GSVIVG01037651001 Vitis vinifera HOM05D001172 ORTHO05D001128 4.6e-13 78.2 94 48.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 6.0e-13 77.8 95 47.4
Duzib213G0183 Durio zibethinus HOM05D001172 ORTHO05D001128 7.8e-13 77.4 95 48.4
CiPaw.11G189500 Carya illinoinensis HOM05D001172 ORTHO05D001128 1.0e-12 77.0 90 47.8
Duzib170G0724 Durio zibethinus HOM05D001172 ORTHO05D001128 1.0e-12 77.0 95 47.4
Gohir.D01G066801 Gossypium hirsutum HOM05D001172 ORTHO05D001128 1.0e-12 77.0 97 46.4
CiPaw.12G129900 Carya illinoinensis HOM05D001172 ORTHO05D001128 1.3e-12 76.6 90 48.9
RcHm_v2.0_Chr5g0039601 Rosa chinensis HOM05D001172 ORTHO05D001128 1.3e-12 76.6 97 46.4
Thecc.07G036700 Theobroma cacao HOM05D001172 ORTHO05D001128 1.3e-12 76.6 96 49.0
Gohir.A01G079600 Gossypium hirsutum HOM05D001172 ORTHO05D001128 1.7e-12 76.3 97 46.4
Gohir.A13G138000 Gossypium hirsutum HOM05D001172 ORTHO05D001128 1.7e-12 76.3 96 46.9
QL08p010134 Quercus lobata HOM05D001172 ORTHO05D001128 1.7e-12 76.3 90 48.9
FAN16G0205 Fragaria x ananassa HOM05D001172 ORTHO05D001128 2.3e-12 75.9 97 45.4
vmacro11725 Vaccinium macrocarpon HOM05D001172 ORTHO05D001128 2.3e-12 75.9 97 46.4
FAN11G1361 Fragaria x ananassa HOM05D001172 ORTHO05D001128 3.0e-12 75.5 97 45.4
Oeu042938.1 Olea europaea HOM05D001172 ORTHO05D001128 3.0e-12 75.5 99 49.5
FvH4_3g22710 Fragaria vesca HOM05D001172 ORTHO05D001128 3.9e-12 75.1 97 45.4
unitig_85.g27326 Utricularia gibba HOM05D001172 ORTHO05D001128 3.9e-12 75.1 92 43.5
Lsat_1_v5_gn_7_108540 Lactuca sativa HOM05D001172 ORTHO05D001128 5.0e-12 74.7 100 45.0
HanXRQChr11g0337691 Helianthus annuus HOM05D001172 ORTHO05D001128 8.6e-12 73.9 96 44.8
Duzib268G0571 Durio zibethinus HOM05D001172 ORTHO05D001128 1.1e-11 73.6 95 46.3
Actinidia05095 Actinidia chinensis HOM05D001172 ORTHO05D001128 1.9e-11 72.8 98 44.9
Duzib268G0132 Durio zibethinus HOM05D001172 ORTHO05D001128 3.3e-11 72.0 73 54.8
Manes.03G129300 Manihot esculenta HOM05D001172 ORTHO05D001128 3.3e-11 72.0 95 46.3
Gorai.002G088700 Gossypium raimondii HOM05D001172 ORTHO05D001128 4.3e-11 71.6 89 47.2
Cpa.g.sc12.307 Carica papaya HOM05D001172 ORTHO05D001128 5.6e-11 71.2 101 42.6
Atru.chr2.3410 Acer truncatum HOM05D001172 ORTHO05D001128 7.3e-11 70.9 95 43.2
Gohir.D13G142800 Gossypium hirsutum HOM05D001172 ORTHO05D001128 7.3e-11 70.9 96 44.8
Gorai.013G159600 Gossypium raimondii HOM05D001172 ORTHO05D001128 7.3e-11 70.9 96 44.8
Medtr5g092790 Medicago truncatula HOM05D001172 ORTHO05D001128 7.3e-11 70.9 91 41.8
Sabra11G0125700 Salix brachista HOM05D001172 ORTHO05D001128 1.6e-10 69.7 96 41.7
ECA236G3186 Erigeron canadensis HOM05D001172 ORTHO05D001128 2.1e-10 69.3 99 44.4
Medtr5g092750 Medicago truncatula HOM05D001172 ORTHO05D001128 2.1e-10 69.3 94 40.4
TPR.G1207 Trifolium pratense HOM05D001172 ORTHO05D001128 3.6e-10 68.6 91 41.8
Lsat_1_v5_gn_9_93880 Lactuca sativa HOM05D001172 ORTHO05D001128 4.7e-10 68.2 97 39.2
ECA240G2601 Erigeron canadensis HOM05D001172 ORTHO05D001128 6.2e-10 67.8 96 39.6
Thhalv10022113m.g Eutrema salsugineum HOM05D001172 ORTHO05D001128 4.0e-09 65.1 90 40.0
Glyma.08G316400 Glycine max HOM05D001172 ORTHO05D001128 1.5e-08 63.2 94 43.6
Nn6g33558 Nelumbo nucifera HOM05D001172 ORTHO05D001128 2.0e-08 62.8 96 38.5
Psat2g010840 Pisum sativum HOM05D001172 ORTHO05D001128 3.4e-08 62.0 110 39.1
Psat2g011480 Pisum sativum HOM05D001172 ORTHO05D001128 4.4e-08 61.6 110 39.1
Actinidia10735 Actinidia chinensis HOM05D001172 ORTHO05D001128 7.5e-08 60.8 97 36.1
HPP92_001776 Vanilla planifolia HOM05D001172 ORTHO05D001128 9.9e-08 60.5 69 49.3
Aa31LG8G7210 Aethionema arabicum HOM05D001172 ORTHO05D001128 2.2e-07 59.3 90 38.9
CARHR096110 Cardamine hirsuta HOM05D001172 ORTHO05D001128 2.2e-07 59.3 90 38.9
BcaB06g26105 Brassica carinata HOM05D001172 ORTHO05D001128 2.9e-07 58.9 91 41.8
MSTRG.12973 Avicennia marina HOM05D001172 ORTHO05D001128 3.7e-07 58.5 35 77.1
Ca_14727_v3 Cicer arietinum L. HOM05D001172 ORTHO05D001128 3.7e-07 58.5 92 40.2
PSO541G3198 Papaver somniferum HOM05D001172 ORTHO05D001128 4.9e-07 58.2 90 36.7
PSO675G1544 Papaver somniferum HOM05D001172 ORTHO05D001128 6.4e-07 57.8 90 35.6
Phvul.008G266700 Phaseolus vulgaris HOM05D001172 ORTHO05D001128 6.4e-07 57.8 92 42.4
VMungo0647G1003 Vigna mungo HOM05D001172 ORTHO05D001128 1.1e-06 57.0 90 41.1
A05p28500 Brassica napus HOM05D001172 ORTHO05D001128 1.4e-06 56.6 91 40.7
BraA05t21728Z Brassica rapa HOM05D001172 ORTHO05D001128 1.9e-06 56.2 86 39.5
AL3G34110 Arabidopsis lyrata HOM05D001172 ORTHO05D001128 3.2e-06 55.5 90 36.7
AT3G20395 Arabidopsis thaliana HOM05D001172 ORTHO05D001128 3.2e-06 55.5 90 36.7
Glyma.02G291200 Glycine max HOM05D001172 ORTHO05D001128 3.2e-06 55.5 92 39.1
Haze_09677 Corylus avellana HOM05D001172 ORTHO05D001128 7.1e-06 54.3 90 36.7
LjContig00272g0027997 Lotus japonicus HOM05D001172 ORTHO05D001128 9.2e-06 53.9 91 39.6


User provided reference genes

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