Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 3.1e-198 694.9 343 100.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 7.9e-101 371.3 344 57.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 3.9e-100 369.0 356 55.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.8e-97 360.1 360 55.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 9.1e-97 357.8 345 55.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 5.0e-95 352.1 357 55.2
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 8.5e-95 351.3 355 56.6
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.2e-94 349.4 350 53.4
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.2e-94 349.4 346 54.3
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 9.4e-94 347.8 296 62.8
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.6e-93 347.1 343 54.2
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.6e-93 347.1 350 55.1
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.1e-93 346.7 351 55.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.6e-93 345.9 351 53.3
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 7.9e-93 344.7 354 55.4
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.4e-92 344.0 351 53.3
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.4e-92 344.0 351 53.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 8.8e-92 341.3 359 55.4
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.1e-91 340.9 299 60.5
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.1e-91 340.9 299 60.5
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-91 340.9 351 53.3
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.1e-91 340.9 327 56.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-91 340.5 358 53.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 7.4e-91 338.2 351 53.3
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.7e-91 337.8 351 51.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 9.7e-91 337.8 351 51.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.7e-90 335.9 349 52.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.8e-90 335.5 357 52.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 8.2e-90 334.7 341 52.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-89 334.3 359 53.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-89 334.3 349 55.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.1e-89 334.3 352 53.1
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.8e-89 333.6 302 58.6
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.4e-89 333.2 304 57.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.1e-89 332.4 351 52.4
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 5.3e-89 332.0 380 51.1
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 7.0e-89 331.6 349 55.3
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 9.1e-89 331.3 350 52.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.6e-88 329.7 303 58.4
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.6e-88 329.7 343 51.9
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.5e-88 329.3 313 57.2
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 3.5e-88 329.3 353 52.7
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.5e-88 328.9 326 55.2
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-87 327.4 358 51.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.7e-87 327.0 348 50.9
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.2e-87 326.6 349 52.4
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 8.5e-87 324.7 295 58.3
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.1e-86 324.3 346 51.4
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.9e-86 323.6 350 49.1
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.2e-86 322.8 353 52.1
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.2e-86 322.4 304 57.9
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.5e-86 322.0 340 51.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 2.7e-85 319.7 356 52.0
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 3.6e-85 319.3 338 53.6
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.7e-85 318.9 362 49.4
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 6.1e-85 318.5 347 51.9
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 8.0e-85 318.2 311 53.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.0e-84 317.8 363 49.6
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.4e-84 317.4 357 50.1
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 1.4e-84 317.4 347 51.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.8e-84 317.0 289 55.4
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 5.2e-84 315.5 349 51.6
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 8.8e-84 314.7 402 46.0
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 8.8e-84 314.7 357 52.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-83 314.3 350 50.9
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.5e-83 313.9 302 57.6
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 1.5e-83 313.9 345 51.0
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.0e-83 313.5 337 50.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.0e-83 313.5 349 51.3
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.6e-83 313.2 327 52.6
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.6e-83 313.2 327 51.4
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 5.7e-83 312.0 307 53.7
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 7.4e-83 311.6 300 54.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.3e-82 310.8 372 47.3
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-82 310.8 304 56.6
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.7e-82 310.5 372 47.3
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.7e-82 309.3 327 50.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.8e-82 308.9 356 48.6
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.1e-81 307.8 372 47.0
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.1e-81 307.8 372 47.0
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.4e-81 307.4 353 51.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.1e-81 306.2 350 49.7
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 5.3e-81 305.4 352 51.4
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.1e-81 304.7 347 49.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.6e-80 303.9 294 53.4
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 5.9e-80 302.0 351 49.6
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 7.7e-80 301.6 346 49.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.3e-79 300.8 349 49.0
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.2e-79 300.1 353 49.6
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 8.5e-79 298.1 295 53.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 9.4e-78 294.7 335 51.6
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.7e-77 293.1 286 55.2
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.7e-77 293.1 349 49.0
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.7e-77 292.4 288 53.8
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 3.0e-76 289.7 350 48.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 6.8e-76 288.5 370 45.7
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 8.8e-76 288.1 333 50.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.3e-74 284.3 366 45.1
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.8e-73 280.4 301 54.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.7e-72 276.6 342 48.0
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 3.8e-71 272.7 338 47.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.8e-71 272.7 338 47.9
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 8.5e-71 271.6 353 47.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.5e-71 271.6 384 44.3
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.1e-70 271.2 237 61.2
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.2e-70 269.6 294 52.0
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 6.3e-66 255.4 306 48.7
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 2.3e-63 246.9 374 40.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 3.0e-60 236.5 246 50.4
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.6e-59 233.4 223 53.8
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 2.8e-58 229.9 399 39.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-57 227.6 291 46.0
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.7e-56 223.4 326 41.4
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.4e-51 206.1 205 56.1
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.7e-50 204.1 306 42.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 4.9e-50 202.6 300 41.0
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 6.4e-50 202.2 321 40.8
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.1e-49 201.4 330 42.4
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 7.0e-49 198.7 334 40.1
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 3.5e-48 196.4 167 53.9
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.6e-45 187.6 366 35.8
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.9e-42 176.8 291 39.5
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.9e-42 176.8 348 35.3
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.7e-42 176.4 131 62.6
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 7.1e-41 172.2 115 64.3
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.0e-39 166.8 117 65.0
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.5e-38 163.7 203 41.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 1.0e-31 141.7 183 48.1
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 2.2e-26 124.0 128 46.9
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 8.7e-23 112.1 175 45.1
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 9.6e-22 108.6 138 41.3
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 5.3e-20 102.8 188 42.6
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.5e-19 101.3 114 47.4
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.0e-19 100.9 65 72.3
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 9.9e-19 98.6 65 70.8
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-16 91.7 72 56.9
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 6.6e-15 85.9 179 29.6
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.0e-12 75.5 143 42.7
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.2e-11 75.1 204 28.4
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 5.8e-11 72.8 70 55.7
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 5.8e-11 72.8 70 55.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.1e-09 68.6 50 68.0
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 2.4e-09 67.4 58 60.3
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.4e-09 67.4 58 60.3


User provided reference genes

Program Settings