Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 3.4e-192 674.9 346 100.0
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.5e-139 500.0 347 73.5
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 2.3e-132 476.1 336 71.1
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 6.9e-129 464.5 335 69.9
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.1e-121 440.7 336 65.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 3.1e-121 439.1 338 65.4
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 2.2e-119 433.0 344 63.1
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 6.5e-119 431.4 338 66.0
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 8.5e-119 431.0 339 65.2
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.4e-118 430.3 343 62.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.9e-118 429.9 335 64.5
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.5e-118 429.5 349 64.2
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 5.5e-118 428.3 347 62.0
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.1e-117 426.4 342 63.2
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.1e-117 426.4 336 64.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.1e-117 426.4 329 65.0
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.6e-117 425.6 350 62.6
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 4.7e-117 425.2 337 65.3
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 8.0e-117 424.5 337 65.6
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 1.8e-116 423.3 320 66.2
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.8e-116 423.3 342 62.0
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.8e-116 423.3 331 65.3
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.3e-116 422.9 349 61.9
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 2.3e-116 422.9 340 62.9
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 3.0e-116 422.5 343 63.6
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 5.2e-116 421.8 350 62.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 5.2e-116 421.8 318 65.1
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 5.2e-116 421.8 335 63.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.8e-116 421.0 340 62.4
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.1e-115 420.6 337 62.9
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.5e-115 420.2 337 64.7
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 2.6e-115 419.5 319 63.6
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 2.6e-115 419.5 336 63.7
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 4.4e-115 418.7 355 59.7
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 5.7e-115 418.3 315 66.3
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 9.7e-115 417.5 335 63.9
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.8e-114 416.0 341 61.9
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.8e-113 413.3 343 62.4
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.8e-113 413.3 343 62.4
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.1e-113 412.1 339 62.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.3e-113 411.8 331 61.9
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 7.0e-113 411.4 338 62.7
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.6e-112 410.2 348 60.6
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 1.6e-112 410.2 345 60.9
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 2.0e-112 409.8 340 61.2
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.6e-112 409.5 313 65.5
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 2.6e-112 409.5 341 60.1
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 4.5e-112 408.7 342 62.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 5.9e-112 408.3 347 60.2
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 7.7e-112 407.9 331 62.5
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.0e-111 407.5 315 64.8
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 6.5e-111 404.8 334 60.2
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 1.1e-110 404.1 335 61.8
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.1e-110 404.1 327 63.3
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.9e-110 403.3 340 59.4
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.5e-110 402.9 327 62.7
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 5.5e-110 401.7 343 58.9
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 7.2e-110 401.4 342 59.1
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.2e-109 400.6 344 58.4
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.1e-109 399.8 313 61.0
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.1e-109 399.8 312 61.5
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.6e-109 399.1 313 61.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.6e-109 399.1 336 60.7
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 8.0e-109 397.9 343 57.4
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 1.0e-108 397.5 320 62.8
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.0e-108 397.5 339 60.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 4.0e-108 395.6 337 58.8
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 5.2e-108 395.2 334 61.7
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 8.8e-108 394.4 347 59.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.5e-107 393.7 343 58.0
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.3e-107 392.5 344 57.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 7.5e-107 391.3 335 60.0
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 1.3e-106 390.6 342 59.1
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.7e-106 390.2 330 59.1
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 3.7e-106 389.0 321 63.2
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 6.3e-106 388.3 338 61.2
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.1e-105 386.0 345 57.4
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-104 384.0 336 57.1
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 1.2e-104 384.0 336 57.1
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 1.2e-104 384.0 346 56.6
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 2.7e-104 382.9 341 56.9
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 2.7e-104 382.9 341 56.9
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 1.7e-103 380.2 340 57.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 2.9e-103 379.4 347 55.6
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.9e-103 379.4 313 58.5
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.9e-103 379.4 313 58.5
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.9e-103 379.4 313 58.5
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-102 377.5 330 60.6
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 4.2e-102 375.6 336 58.3
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 3.6e-101 372.5 317 58.7
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.8e-100 368.2 331 58.3
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.7e-98 363.6 316 56.6
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 4.1e-97 359.0 330 54.8
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.6e-96 357.1 333 56.8
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 2.0e-96 356.7 338 57.1
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 4.5e-96 355.5 339 53.4
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.5e-96 355.5 339 53.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.3e-95 354.0 292 59.9
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.7e-95 353.6 346 53.8
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 3.8e-95 352.4 332 54.5
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 8.6e-95 351.3 268 63.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 1.5e-94 350.5 277 64.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 1.6e-93 347.1 331 55.3
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 8.0e-93 344.7 316 59.2
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 1.8e-92 343.6 333 53.8
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 8.9e-92 341.3 348 54.0
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.6e-91 339.7 341 51.3
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.7e-90 337.0 335 53.7
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.4e-89 334.0 326 54.0
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.4e-89 332.0 335 53.1
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 7.0e-89 331.6 328 55.5
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 2.0e-88 330.1 311 54.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.5e-88 329.3 330 54.5
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 4.5e-88 328.9 335 51.6
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.9e-88 328.6 342 53.5
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.3e-87 327.4 335 52.2
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 6.6e-87 325.1 325 52.0
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.5e-86 323.9 341 51.3
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.5e-86 323.9 334 53.9
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.3e-86 322.8 335 51.3
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 9.5e-86 321.2 337 48.7
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 6.1e-85 318.5 339 51.0
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.4e-84 317.4 190 77.9
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 2.3e-84 316.6 336 52.4
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 5.2e-84 315.5 338 49.4
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.8e-84 315.1 336 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.4e-81 307.4 331 48.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.4e-81 307.4 318 48.1
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.2e-81 306.2 283 56.9
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 1.6e-80 303.9 340 50.0
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 6.0e-80 302.0 387 43.9
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.8e-80 301.6 314 47.5
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.0e-79 301.2 311 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.3e-79 300.8 318 48.1
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 1.6e-77 293.9 342 45.6
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 2.1e-77 293.5 320 46.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 4.7e-77 292.4 343 45.5
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 4.7e-77 292.4 343 45.5
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 4.7e-77 292.4 330 46.4
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 8.0e-77 291.6 341 46.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 1.8e-76 290.4 268 56.7
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 4.0e-76 289.3 341 46.0
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 1.5e-75 287.3 259 59.1
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 5.8e-75 285.4 336 46.7
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 1.7e-74 283.9 274 54.4
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 9.2e-73 278.1 177 71.2
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.7e-72 276.6 220 60.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 2.3e-71 273.5 190 68.4
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 6.2e-69 265.4 189 64.6
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.2e-68 262.3 273 49.5
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 7.5e-67 258.5 189 64.6
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.1e-65 251.9 189 62.4
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.9e-60 235.0 183 61.7
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 2.1e-56 223.8 342 39.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 7.8e-56 221.9 190 56.3
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 9.6e-54 214.9 260 48.8
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.3e-52 209.1 184 56.5
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 4.2e-49 199.5 220 52.3
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 9.3e-49 198.4 330 37.9
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.6e-48 197.6 346 37.6
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.5e-48 196.4 224 50.9
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.2e-41 173.3 161 55.9
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-34 151.4 172 45.9
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 2.2e-34 150.6 162 52.5
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 3.9e-31 139.8 104 65.4
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 9.6e-30 135.2 92 68.5
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 6.5e-26 122.5 89 60.7
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 8.4e-26 122.1 167 47.3
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.9e-25 120.9 95 61.1
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 3.9e-23 113.2 75 72.0
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 3.3e-22 110.2 334 28.7
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 1.3e-21 108.2 81 61.7
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 4.8e-21 106.3 80 61.2
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 2.4e-20 104.0 76 63.2
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 2.2e-18 97.4 75 65.3
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 2.0e-14 84.3 57 66.7
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 2.4e-12 77.4 49 71.4
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 5.3e-12 76.3 74 54.1
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-11 74.7 67 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.4e-07 61.6 64 45.3


User provided reference genes

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