Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 4.6e-211 737.6 377 100.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.4e-144 514.6 352 73.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.0e-141 505.8 362 71.5
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.9e-140 503.1 328 75.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 3.1e-138 495.7 349 71.9
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.2e-137 493.8 351 70.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 7.5e-137 491.1 373 67.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 9.8e-137 490.7 347 70.6
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.9e-136 488.4 364 68.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.2e-135 485.7 369 67.8
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.2e-135 485.7 335 72.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.2e-135 485.7 329 73.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.1e-135 484.6 352 70.5
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.2e-134 483.8 351 69.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 6.0e-134 481.5 351 68.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.3e-133 480.3 365 67.7
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.1e-133 478.4 352 69.9
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 6.6e-133 478.0 349 69.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.6e-133 478.0 359 69.6
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 6.6e-133 478.0 367 66.5
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.1e-132 477.2 353 69.1
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 7.3e-132 474.6 326 72.1
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.4e-130 470.3 326 70.9
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 6.8e-130 468.0 359 67.4
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 8.9e-130 467.6 358 67.3
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.5e-129 466.8 359 67.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.0e-129 466.5 359 67.1
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.6e-129 466.1 345 67.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.4e-129 465.3 369 65.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.9e-128 462.6 344 67.7
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.7e-128 462.2 325 72.3
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.1e-127 460.7 359 64.6
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.4e-127 460.3 363 65.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.4e-127 460.3 352 68.5
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.4e-127 459.5 359 65.5
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 4.1e-127 458.8 342 67.0
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 4.1e-127 458.8 325 69.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 5.4e-127 458.4 338 70.1
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 7.1e-127 458.0 357 65.0
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 7.8e-126 454.5 344 67.2
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.3e-125 453.0 380 62.4
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.6e-125 451.4 351 67.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 6.6e-125 451.4 348 67.2
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.6e-125 451.1 348 67.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.6e-125 451.1 348 67.0
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.1e-124 450.7 336 67.0
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.9e-124 449.9 323 70.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.9e-124 449.9 323 70.3
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.5e-124 449.5 363 64.7
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.5e-124 449.5 373 63.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 3.3e-124 449.1 326 69.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.3e-124 448.7 336 67.6
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.3e-124 448.7 380 61.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 7.3e-124 448.0 345 68.7
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 7.3e-124 448.0 405 60.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 9.6e-124 447.6 336 67.6
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 9.6e-124 447.6 325 67.1
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.6e-123 446.8 359 64.1
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 2.1e-123 446.4 323 70.0
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.2e-123 444.9 366 63.7
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 8.1e-123 444.5 333 65.5
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.4e-122 443.7 325 69.2
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.0e-122 442.2 325 68.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.5e-121 440.3 323 68.7
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 3.4e-121 439.1 341 66.9
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.4e-121 439.1 345 65.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 7.6e-121 438.0 371 62.5
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.7e-120 436.8 371 62.3
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.4e-120 434.9 351 64.7
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.1e-119 434.1 252 81.3
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.9e-119 433.3 361 62.6
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.2e-119 432.6 355 62.3
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.4e-119 431.8 349 63.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 7.1e-119 431.4 252 80.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.2e-118 430.6 367 60.5
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.6e-118 428.7 360 61.4
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.0e-118 428.3 387 59.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.0e-118 428.3 362 60.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.7e-117 426.8 330 67.3
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.1e-116 424.1 363 60.1
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-116 424.1 347 63.4
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.1e-116 424.1 362 61.0
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.5e-116 422.9 376 59.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 3.3e-116 422.5 360 61.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.3e-116 422.5 337 64.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 4.3e-116 422.2 363 60.3
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-116 421.4 359 61.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.6e-116 421.0 335 63.9
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 9.6e-116 421.0 358 59.2
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 4.8e-115 418.7 356 61.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 6.2e-115 418.3 377 60.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 6.2e-115 418.3 331 65.0
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-114 417.2 350 62.9
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.4e-114 417.2 374 59.9
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.8e-114 416.8 381 58.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-114 416.4 359 60.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-114 416.0 356 61.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.0e-114 415.6 359 59.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.3e-114 415.2 252 76.6
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.2e-113 414.1 355 62.3
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.5e-113 413.7 363 59.2
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.0e-113 413.3 354 61.6
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.6e-113 412.9 338 62.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.6e-113 412.9 308 65.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.6e-113 412.9 304 66.4
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.4e-113 412.1 359 60.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.4e-106 390.6 351 59.3
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.8e-106 390.2 350 58.3
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.1e-106 389.4 322 60.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.3e-104 384.0 365 59.5
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.4e-104 381.3 338 60.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.9e-103 380.2 332 60.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.2e-103 379.4 252 73.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 5.5e-103 378.6 350 57.1
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.3e-103 377.9 347 57.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.1e-102 376.7 343 55.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 7.9e-102 374.8 357 56.9
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.3e-101 374.0 299 65.2
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.8e-101 373.6 334 59.9
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.3e-101 373.2 454 47.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.9e-101 372.5 334 59.0
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 8.7e-101 371.3 334 59.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-100 370.5 332 58.7
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.3e-100 369.0 333 56.8
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.4e-100 368.2 336 59.8
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 7.4e-100 368.2 332 58.4
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.4e-100 368.2 336 59.8
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-99 367.5 344 57.6
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.3e-99 367.5 344 57.6
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-98 364.0 336 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 6.9e-98 361.7 378 52.9
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.0e-98 361.3 333 58.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.2e-97 360.9 256 63.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.7e-96 357.1 344 54.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.5e-92 344.0 346 55.2
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.8e-90 337.0 362 51.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.5e-88 328.2 252 66.3
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 3.2e-79 299.7 173 80.9
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.2e-79 299.3 215 66.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 4.7e-54 216.1 314 38.5
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 9.8e-52 208.4 302 40.1
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-47 194.5 153 62.1
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-46 189.9 136 65.4
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.1e-38 164.1 223 43.9
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 9.5e-31 138.7 189 43.9
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 7.8e-25 119.0 213 38.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.3e-24 117.5 107 59.8
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 4.3e-23 113.2 176 38.6
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.6e-20 104.0 259 29.0
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 9.2e-18 95.5 146 45.9
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.6e-15 86.3 109 47.7
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.8e-14 84.0 56 67.9
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 2.7e-09 67.4 36 83.3


User provided reference genes

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