Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 0.0e+00 1111.7 534 100.0
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 8.3e-206 720.7 503 66.2
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 4.1e-205 718.4 523 66.0
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 2.0e-204 716.1 522 64.6
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 5.9e-204 714.5 524 65.1
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 1.5e-202 709.9 520 65.6
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 8.0e-201 704.1 478 69.0
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 8.3e-198 694.1 525 63.2
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.4e-197 692.6 524 62.6
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 9.2e-197 690.6 524 63.2
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 1.2e-196 690.3 521 63.5
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.2e-196 690.3 517 63.1
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 1.6e-196 689.9 521 63.3
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 7.8e-196 687.6 525 62.7
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 7.8e-196 687.6 520 63.1
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 7.8e-196 687.6 523 61.8
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 2.3e-195 686.0 527 63.0
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 1.5e-194 683.3 517 62.1
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 1.9e-194 682.9 525 62.7
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 2.5e-194 682.6 530 62.5
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 3.3e-194 682.2 529 62.0
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 3.3e-194 682.2 518 62.2
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 4.3e-194 681.8 525 62.5
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.2e-193 680.2 517 61.9
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.6e-193 679.9 522 60.9
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.6e-193 679.9 522 61.7
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 1.6e-193 679.9 522 61.7
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 4.7e-193 678.3 522 60.3
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 4.7e-193 678.3 527 60.5
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 6.2e-193 677.9 529 60.1
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 8.0e-193 677.6 523 60.6
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.1e-192 677.2 522 60.5
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.4e-192 676.8 523 60.4
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 1.4e-192 676.8 526 59.9
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.4e-192 676.8 523 62.3
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.8e-192 676.4 523 62.5
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 2.3e-192 676.0 528 59.8
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 1.2e-191 673.7 523 60.2
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 4.4e-191 671.8 525 62.5
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.5e-191 671.0 531 61.6
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 1.3e-190 670.2 522 62.6
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 1.7e-190 669.8 519 62.0
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 2.2e-190 669.5 522 60.2
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.4e-189 666.8 518 60.2
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 1.4e-189 666.8 479 65.1
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 9.2e-189 664.1 554 57.8
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 1.2e-188 663.7 528 60.0
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 1.2e-188 663.7 521 60.7
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.1e-188 662.9 523 61.0
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 3.5e-188 662.1 558 57.2
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 6.0e-188 661.4 515 61.2
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 7.8e-188 661.0 520 61.3
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.0e-187 660.6 525 60.6
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 3.9e-187 658.7 497 62.2
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 6.6e-187 657.9 555 57.8
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.1e-186 657.1 521 60.3
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 2.5e-186 656.0 520 60.8
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 4.7e-185 651.7 521 59.7
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 1.1e-184 650.6 521 59.9
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 1.4e-184 650.2 549 57.2
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.3e-184 649.4 521 59.3
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 2.2e-182 642.9 606 53.8
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 6.4e-182 641.3 521 59.1
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.4e-181 640.2 546 57.9
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.4e-181 640.2 521 59.1
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.4e-181 640.2 528 57.8
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 3.2e-181 639.0 522 59.0
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 3.2e-181 639.0 515 57.5
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.2e-180 637.1 519 59.2
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.5e-178 629.4 485 61.2
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 2.5e-178 629.4 526 57.6
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 4.3e-178 628.6 518 58.5
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 4.0e-176 622.1 481 61.3
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 6.8e-176 621.3 448 65.2
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 3.4e-175 619.0 529 58.6
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.7e-174 616.7 482 60.8
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 3.5e-172 609.0 525 55.6
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.0e-171 605.9 479 59.1
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.9e-171 605.5 479 59.3
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 3.9e-171 605.5 522 55.9
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 1.5e-170 603.6 527 55.2
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 3.3e-170 602.4 470 61.9
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.3e-170 602.4 535 56.8
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 9.6e-170 600.9 528 54.7
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 9.6e-170 600.9 525 57.1
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 4.7e-169 598.6 524 55.2
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 1.1e-168 597.4 516 56.2
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 3.1e-168 595.9 522 55.0
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 4.0e-168 595.5 524 55.0
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 5.8e-167 591.7 466 59.4
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 7.6e-167 591.3 527 54.3
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 6.4e-166 588.2 526 53.2
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 1.4e-165 587.0 452 61.3
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 7.1e-165 584.7 429 65.0
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.7e-163 580.1 590 52.2
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.3e-163 579.7 521 55.5
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 2.4e-160 569.7 479 55.5
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.2e-158 563.1 563 52.8
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 3.8e-158 562.4 417 61.9
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 2.3e-155 553.1 514 54.3
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-146 522.7 584 49.5
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 8.2e-145 518.1 403 60.0
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 2.4e-144 516.5 526 47.9
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 7.6e-143 511.5 416 59.9
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 1.7e-142 510.4 413 58.8
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 2.3e-139 500.0 415 58.8
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 1.3e-134 484.2 416 58.7
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.3e-134 484.2 479 51.4
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 2.1e-132 476.9 383 60.3
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 3.6e-124 449.5 344 64.2
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 1.8e-123 447.2 521 47.4
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.0e-115 421.4 310 64.2
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 1.5e-106 391.0 343 56.6
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 4.2e-101 372.9 300 60.0
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 6.1e-92 342.4 252 65.5
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 2.7e-87 327.0 258 56.2
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 3.9e-86 323.2 263 59.7
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 3.3e-85 320.1 261 57.5
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 4.3e-85 319.7 260 58.1
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 2.0e-82 310.8 260 56.5
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.0e-82 310.8 363 43.3
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 2.2e-81 307.4 250 58.0
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.7e-79 300.4 245 57.6
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 3.0e-78 297.0 261 54.0
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 3.9e-78 296.6 264 53.8
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 8.6e-78 295.4 252 57.9
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 3.3e-77 293.5 303 46.9
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 6.2e-76 289.3 259 56.0
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 4.0e-75 286.6 236 58.9
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 9.8e-74 282.0 223 62.3
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 8.3e-73 278.9 257 54.5
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 7.0e-72 275.8 221 59.7
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 9.2e-72 275.4 208 61.5
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 6.0e-71 272.7 211 56.4
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 1.9e-64 251.1 257 49.0
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 7.1e-64 249.2 175 67.4
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 3.5e-63 246.9 261 50.6
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 1.4e-59 235.0 142 74.6
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 1.3e-57 228.4 244 45.1
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 1.6e-52 211.5 206 50.0
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 8.1e-52 209.1 174 56.9
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 5.3e-51 206.5 313 37.4
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 7.6e-50 202.6 158 60.8
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 9.3e-48 195.7 168 53.6
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 2.1e-47 194.5 181 51.4
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 2.8e-44 184.1 230 42.2
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 4.2e-40 170.2 152 51.3
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.9e-37 161.4 278 38.1
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 2.6e-34 151.0 169 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.2e-33 147.9 124 55.6
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 3.8e-33 147.1 98 69.4
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 4.6e-31 140.2 112 58.0
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 1.9e-29 134.8 92 70.7
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 5.7e-29 133.3 70 80.0
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 1.8e-27 128.3 92 66.3
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 3.1e-27 127.5 110 54.5
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 4.2e-24 117.1 75 68.0
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 4.2e-24 117.1 209 37.8
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 6.7e-22 109.8 121 47.9
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 1.1e-21 109.0 88 58.0
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 7.4e-21 106.3 104 50.0
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.8e-20 104.4 86 55.8
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.1e-19 100.9 80 57.5
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 7.7e-18 96.3 107 47.7
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 7.7e-18 96.3 65 64.6
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 3.8e-17 94.0 94 53.2
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 5.0e-17 93.6 61 68.9
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 1.4e-16 92.0 51 78.4
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 2.7e-15 87.8 60 65.0
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 8.8e-14 82.8 45 75.6
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 8.8e-14 82.8 58 63.8
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 4.5e-10 70.5 79 48.1
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 7.7e-10 69.7 56 64.3
PGSC0003DMG400020960 Solanum tuberosum HOM05D000219 ORTHO05D004649 7.7e-10 69.7 43 72.1
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 6.5e-09 66.6 54 63.0
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 1.1e-08 65.9 44 65.9
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 1.9e-08 65.1 48 60.4
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 1.9e-08 65.1 48 60.4
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 1.9e-08 65.1 48 60.4
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 5.5e-08 63.5 42 66.7
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 4.7e-07 60.5 45 60.0
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 1.0e-06 59.3 73 41.1
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 1.4e-06 58.9 73 41.1
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 1.4e-06 58.9 73 41.1
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 3.0e-06 57.8 37 64.9
Lj8A365T12 Lonicera japonica HOM05D000219 ORTHO05D004649 5.1e-06 57.0 36 63.9
SHI31714 Sapria himalayana HOM05D000219 ORTHO05D004649 6.7e-06 56.6 28 85.7


User provided reference genes

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