Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007950 Simmondsia chinensis HOM05D000604 ORTHO05D000990 2.7e-124 448.7 237 100.0
Ah.04g152290 Amaranthus hybridus HOM05D000604 ORTHO05D000990 1.2e-44 184.1 304 45.1
EL10Ac3g06948 Beta vulgaris HOM05D000604 ORTHO05D000990 2.1e-44 183.3 298 45.0
AUR62024327 Chenopodium quinoa HOM05D000604 ORTHO05D000990 5.2e-43 178.7 301 44.2
AUR62012067 Chenopodium quinoa HOM05D000604 ORTHO05D000990 2.0e-42 176.8 302 44.0
Hund24787 Selenicereus undatus HOM05D000604 ORTHO05D000990 5.2e-35 152.1 291 41.6
Actinidia09673 Actinidia chinensis HOM05D000604 ORTHO05D000990 3.7e-25 119.4 302 37.4
CSS0024194 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D000990 4.9e-25 119.0 292 36.3
vmacro05554 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 8.3e-25 118.2 284 38.4
CSS0024617 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D000990 2.4e-24 116.7 312 36.5
Dinv42501 Davidia involucrata HOM05D000604 ORTHO05D000990 3.5e-23 112.8 312 34.6
Actinidia37120 Actinidia chinensis HOM05D000604 ORTHO05D000990 2.3e-22 110.2 237 41.4
Rhsim06G0240100 Rhododendron simsii HOM05D000604 ORTHO05D000990 8.6e-22 108.2 283 36.4
Rhsim04G0005200 Rhododendron simsii HOM05D000604 ORTHO05D000990 1.9e-21 107.1 264 39.4
Sabra05G0079700 Salix brachista HOM05D000604 ORTHO05D000990 4.3e-21 105.9 309 33.7
Potri.005G097400 Populus trichocarpa HOM05D000604 ORTHO05D000990 3.6e-20 102.8 320 32.5
Hma1.2p1_0151F.1_g067550 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 2.4e-19 100.1 302 35.1
Hma1.2p1_0637F.1_g193380 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 3.1e-19 99.8 302 35.1
vmacro11718 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 3.1e-19 99.8 260 37.7
CANSAT56G2040 Cannabis sativa HOM05D000604 ORTHO05D000990 4.0e-19 99.4 307 35.5
vmacro09776 Vaccinium macrocarpon HOM05D000604 ORTHO05D000990 5.2e-19 99.0 269 38.3
ECA246G5101 Erigeron canadensis HOM05D000604 ORTHO05D000990 1.2e-18 97.8 270 34.4
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 2.9e-17 93.2 315 33.0
Prupe.4G137800 Prunus persica HOM05D000604 ORTHO05D000990 4.9e-17 92.4 299 33.8
MD05G1222500 Malus domestica HOM05D000604 ORTHO05D000990 1.4e-16 90.9 285 34.0
Prupe.4G137700 Prunus persica HOM05D000604 ORTHO05D000990 1.4e-16 90.9 310 33.2
Lj1C1245G4 Lonicera japonica HOM05D000604 ORTHO05D000990 3.2e-16 89.7 278 34.5
Potri.007G067100 Populus trichocarpa HOM05D000604 ORTHO05D000990 3.2e-16 89.7 233 35.2
Manes.06G174000 Manihot esculenta HOM05D000604 ORTHO05D000990 4.2e-16 89.4 231 36.8
RcHm_v2.0_Chr5g0026141 Rosa chinensis HOM05D000604 ORTHO05D000990 1.2e-15 87.8 286 32.5
Manes.14G011800 Manihot esculenta HOM05D000604 ORTHO05D000990 1.6e-15 87.4 228 36.0
GSVIVG01020280001 Vitis vinifera HOM05D000604 ORTHO05D000990 3.5e-15 86.3 265 34.3
FvH4_3g15520 Fragaria vesca HOM05D000604 ORTHO05D000990 2.3e-14 83.6 284 33.1
FAN11G0830 Fragaria x ananassa HOM05D000604 ORTHO05D000990 5.1e-14 82.4 284 33.1
MD10G1204100 Malus domestica HOM05D000604 ORTHO05D000990 8.7e-14 81.6 284 33.1
PSO017G0977 Papaver somniferum HOM05D000604 ORTHO05D000990 1.5e-13 80.9 307 33.2
Aqoxy6G01124 Aquilegia oxysepala HOM05D000604 ORTHO05D000990 3.3e-13 79.7 232 35.8
PSO478G1429 Papaver somniferum HOM05D000604 ORTHO05D000990 5.6e-13 79.0 300 32.0
CANSAT78G0138 Cannabis sativa HOM05D000604 ORTHO05D000990 7.3e-13 78.6 216 36.1
FAN21G3921 Fragaria x ananassa HOM05D000604 ORTHO05D000990 7.3e-13 78.6 285 33.0
Medtr2g068690 Medicago truncatula HOM05D000604 ORTHO05D000990 7.3e-13 78.6 306 31.4
DCAR_027661 Daucus carota HOM05D000604 ORTHO05D000990 9.6e-13 78.2 270 33.7
Migut.L01415 Erythranthe guttata HOM05D000604 ORTHO05D000990 1.3e-12 77.8 307 32.2
HanXRQChr13g0413231 Helianthus annuus HOM05D000604 ORTHO05D000990 1.6e-12 77.4 238 35.7
Potri.001G081600 Populus trichocarpa HOM05D000604 ORTHO05D000990 1.6e-12 77.4 227 33.9
Sabra01G0058800 Salix brachista HOM05D000604 ORTHO05D000990 2.1e-12 77.0 223 35.4
FAN16G3283 Fragaria x ananassa HOM05D000604 ORTHO05D000990 2.8e-12 76.6 297 31.0
Lj4g0005998 Lotus japonicus HOM05D000604 ORTHO05D000990 3.6e-12 76.3 217 35.5
QL09p051250 Quercus lobata HOM05D000604 ORTHO05D000990 3.6e-12 76.3 248 33.9
Dinv00508 Davidia involucrata HOM05D000604 ORTHO05D000990 4.8e-12 75.9 203 34.5
HanXRQChr06g0172701 Helianthus annuus HOM05D000604 ORTHO05D000990 4.8e-12 75.9 258 32.9
TAR625G0165 Trochodendron aralioides HOM05D000604 ORTHO05D000990 4.8e-12 75.9 313 30.7
Thecc.06G135500 Theobroma cacao HOM05D000604 ORTHO05D000990 6.2e-12 75.5 250 33.2
RcHm_v2.0_Chr5g0026151 Rosa chinensis HOM05D000604 ORTHO05D000990 1.1e-11 74.7 293 30.7
Gohir.D10G048200 Gossypium hirsutum HOM05D000604 ORTHO05D000990 1.8e-11 73.9 228 34.6
Gorai.011G051300 Gossypium raimondii HOM05D000604 ORTHO05D000990 1.8e-11 73.9 228 34.6
Lsat_1_v5_gn_3_20820 Lactuca sativa HOM05D000604 ORTHO05D000990 1.8e-11 73.9 198 37.4
Cfa000744 Carpinus fangiana HOM05D000604 ORTHO05D000990 2.4e-11 73.6 240 35.0
Glyma.20G023500 Glycine max HOM05D000604 ORTHO05D000990 2.4e-11 73.6 237 33.3
Potri.003G148800 Populus trichocarpa HOM05D000604 ORTHO05D000990 2.4e-11 73.6 232 32.8
ClCG01G008990 Citrullus lanatus HOM05D000604 ORTHO05D000990 3.1e-11 73.2 244 31.1
FAN25G0167 Fragaria x ananassa HOM05D000604 ORTHO05D000990 3.1e-11 73.2 294 31.0
CiPaw.09G150500 Carya illinoinensis HOM05D000604 ORTHO05D000990 4.0e-11 72.8 250 34.0
Haze_20822 Corylus avellana HOM05D000604 ORTHO05D000990 4.0e-11 72.8 244 31.6
MELO3C021786.2 Cucumis melo HOM05D000604 ORTHO05D000990 4.0e-11 72.8 241 33.6
TWI09G1628 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 4.0e-11 72.8 222 32.4
TWI73G0710 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 4.0e-11 72.8 238 33.2
Zm00001eb428220 Zea mays HOM05D000604 ORTHO05D000990 4.0e-11 72.8 243 35.8
Lsat_1_v5_gn_5_63320 Lactuca sativa HOM05D000604 ORTHO05D000990 5.3e-11 72.4 235 34.0
TWI53G1067 Tripterygium wilfordii HOM05D000604 ORTHO05D000990 5.3e-11 72.4 251 32.3
arahy.Tifrunner.gnm1.ann1.LZ6UUP Arachis hypogaea HOM05D000604 ORTHO05D000990 6.9e-11 72.0 294 31.6
Glyma.07G223700 Glycine max HOM05D000604 ORTHO05D000990 6.9e-11 72.0 237 33.3
Gohir.A10G047001 Gossypium hirsutum HOM05D000604 ORTHO05D000990 6.9e-11 72.0 231 35.5
Lalb_Chr20g0108631 Lupinus albus HOM05D000604 ORTHO05D000990 6.9e-11 72.0 307 30.9
arahy.Tifrunner.gnm1.ann1.MF3YPB Arachis hypogaea HOM05D000604 ORTHO05D000990 9.0e-11 71.6 294 31.6
CsaV3_1G046690 Cucumis sativus L. HOM05D000604 ORTHO05D000990 9.0e-11 71.6 239 31.8
HanXRQChr17g0537651 Helianthus annuus HOM05D000604 ORTHO05D000990 9.0e-11 71.6 253 32.0
Gohir.D09G076400 Gossypium hirsutum HOM05D000604 ORTHO05D000990 1.5e-10 70.9 234 34.6
Gorai.006G091600 Gossypium raimondii HOM05D000604 ORTHO05D000990 1.5e-10 70.9 234 34.6
Oeu007025.1 Olea europaea HOM05D000604 ORTHO05D000990 1.5e-10 70.9 312 32.1
Hma1.2p1_0326F.1_g126230 Hydrangea macrophylla HOM05D000604 ORTHO05D000990 2.0e-10 70.5 197 37.1
Psat1g013160 Pisum sativum HOM05D000604 ORTHO05D000990 2.0e-10 70.5 304 30.9
DCAR_015197 Daucus carota HOM05D000604 ORTHO05D000990 2.6e-10 70.1 309 31.7
Cfa017348 Carpinus fangiana HOM05D000604 ORTHO05D000990 3.4e-10 69.7 295 31.5
CiPaw.10G111800 Carya illinoinensis HOM05D000604 ORTHO05D000990 3.4e-10 69.7 246 34.1
Glyma.20G023800 Glycine max HOM05D000604 ORTHO05D000990 3.4e-10 69.7 225 32.9
Gohir.A09G076500 Gossypium hirsutum HOM05D000604 ORTHO05D000990 3.4e-10 69.7 233 34.8
arahy.Tifrunner.gnm1.ann1.FFMP8K Arachis hypogaea HOM05D000604 ORTHO05D000990 4.4e-10 69.3 294 29.6
Duzib192G0430 Durio zibethinus HOM05D000604 ORTHO05D000990 4.4e-10 69.3 225 34.2
FvH4_3g15521 Fragaria vesca HOM05D000604 ORTHO05D000990 5.8e-10 68.9 293 30.0
Eucgr.E01911 Eucalyptus grandis HOM05D000604 ORTHO05D000990 7.6e-10 68.6 231 33.3
Ciclev10004575m.g Citrus clementina HOM05D000604 ORTHO05D000990 1.3e-09 67.8 291 32.3
Ca_03656_v3 Cicer arietinum L. HOM05D000604 ORTHO05D000990 1.7e-09 67.4 302 30.1
Duzib235G1210 Durio zibethinus HOM05D000604 ORTHO05D000990 1.7e-09 67.4 236 32.2
Phvul.003G138600 Phaseolus vulgaris HOM05D000604 ORTHO05D000990 1.7e-09 67.4 252 29.8
SalBow2G0155 Salvia bowleyana HOM05D000604 ORTHO05D000990 1.7e-09 67.4 284 31.0
VMungo1080G1692 Vigna mungo HOM05D000604 ORTHO05D000990 1.7e-09 67.4 299 32.1
ECA240G3474 Erigeron canadensis HOM05D000604 ORTHO05D000990 2.2e-09 67.0 257 31.9
VMungo0251G0051 Vigna mungo HOM05D000604 ORTHO05D000990 3.8e-09 66.2 233 29.6
Atru.chr10.624 Acer truncatum HOM05D000604 ORTHO05D000990 4.9e-09 65.9 249 32.1
Sed0003721 Sechium edule HOM05D000604 ORTHO05D000990 4.9e-09 65.9 270 29.3
Glyma.08G168800 Glycine max HOM05D000604 ORTHO05D000990 6.4e-09 65.5 303 32.7
Cpa.g.sc882.2 Carica papaya HOM05D000604 ORTHO05D000990 8.4e-09 65.1 298 31.2
Sabra03G0108300 Salix brachista HOM05D000604 ORTHO05D000990 1.1e-08 64.7 246 30.9
Ciclev10018136m.g Citrus clementina HOM05D000604 ORTHO05D000990 2.4e-08 63.5 246 28.9
MBI13_g05973_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D000990 2.4e-08 63.5 241 33.2
CAN.G959.17 Capsicum annuum HOM05D000604 ORTHO05D000990 3.2e-08 63.2 241 31.5
CsaV3_6G013630 Cucumis sativus L. HOM05D000604 ORTHO05D000990 3.2e-08 63.2 265 29.1
MD05G1222600 Malus domestica HOM05D000604 ORTHO05D000990 3.2e-08 63.2 293 30.7
MD10G1204200 Malus domestica HOM05D000604 ORTHO05D000990 3.2e-08 63.2 256 32.8
Actinidia35427 Actinidia chinensis HOM05D000604 ORTHO05D000990 5.4e-08 62.4 182 36.8
Nn1g01904 Nelumbo nucifera HOM05D000604 ORTHO05D000990 5.4e-08 62.4 217 35.0
ClCG02G018570 Citrullus lanatus HOM05D000604 ORTHO05D000990 7.1e-08 62.0 232 30.2
Phvul.005G049900 Phaseolus vulgaris HOM05D000604 ORTHO05D000990 7.1e-08 62.0 300 31.0
TPR.G34064 Trifolium pratense HOM05D000604 ORTHO05D000990 7.1e-08 62.0 215 33.5
Zm00001eb001290 Zea mays HOM05D000604 ORTHO05D000990 7.1e-08 62.0 243 30.9
Glyma.15G258300 Glycine max HOM05D000604 ORTHO05D000990 9.3e-08 61.6 304 30.9
Oeu037964.1 Olea europaea HOM05D000604 ORTHO05D000990 9.3e-08 61.6 269 32.7
Lalb_Chr09g0328901 Lupinus albus HOM05D000604 ORTHO05D000990 1.2e-07 61.2 254 30.3
Psat7g132800 Pisum sativum HOM05D000604 ORTHO05D000990 1.2e-07 61.2 220 31.4
PGR004G1493 Punica granatum HOM05D000604 ORTHO05D000990 1.2e-07 61.2 271 32.1
Sed0015153 Sechium edule HOM05D000604 ORTHO05D000990 1.2e-07 61.2 218 30.7
MBI02_g32745_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D000990 2.7e-07 60.1 259 29.7
Nitab4.5_0010625g0010 Nicotiana tabacum HOM05D000604 ORTHO05D000990 7.9e-07 58.5 318 30.5
Aqoxy5G01616_Aqoxy5G01617 Aquilegia oxysepala HOM05D000604 ORTHO05D000990 1.0e-06 58.2 257 29.2
Migut.D02542 Erythranthe guttata HOM05D000604 ORTHO05D000990 1.0e-06 58.2 237 31.2
Lalb_Chr03g0031731 Lupinus albus HOM05D000604 ORTHO05D000990 1.0e-06 58.2 256 28.1
BraA06t27544Z Brassica rapa HOM05D000604 ORTHO05D000990 3.0e-06 56.6 238 31.1
MELO3C019652.2 Cucumis melo HOM05D000604 ORTHO05D000990 3.0e-06 56.6 235 30.2
Medtr7g094060 Medicago truncatula HOM05D000604 ORTHO05D000990 3.0e-06 56.6 200 30.5
Lalb_Chr18g0057791 Lupinus albus HOM05D000604 ORTHO05D000990 3.9e-06 56.2 230 30.9
Oeu018212.2 Olea europaea HOM05D000604 ORTHO05D000990 3.9e-06 56.2 306 31.4
SGA_v2.0_scaffold186G40121 Striga asiatica HOM05D000604 ORTHO05D000990 3.9e-06 56.2 253 29.2
MSTRG.7900 Avicennia marina HOM05D000604 ORTHO05D000990 8.7e-06 55.1 257 29.6
CDE01G0628 Ceratophyllum demersum HOM05D000604 ORTHO05D000990 8.7e-06 55.1 272 28.3


User provided reference genes

Program Settings