Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1806.6 945 100.0
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 7.4e-250 867.8 954 56.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-245 853.6 955 55.0
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 6.1e-244 848.2 980 53.9
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 8.8e-243 844.3 940 56.0
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 1.3e-241 840.5 980 54.1
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 3.2e-237 825.9 959 53.4
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.0e-234 816.6 972 52.7
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 4.4e-234 815.5 970 53.2
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.2e-233 813.1 945 53.1
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.8e-233 812.8 932 54.2
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 4.1e-232 808.9 960 53.0
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 3.8e-230 802.4 997 52.0
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 5.0e-230 802.0 965 52.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-227 794.3 991 51.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 5.7e-226 788.5 846 55.8
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.1e-224 784.3 1056 49.1
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 4.1e-224 782.3 975 51.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 7.0e-224 781.6 982 50.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.0e-222 777.7 980 51.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.3e-219 766.5 933 51.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.0e-218 763.5 978 51.5
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.3e-214 750.7 1005 49.8
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.8e-214 749.2 985 49.8
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 5.0e-214 748.8 973 50.9
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.3e-213 745.0 794 56.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.2e-212 744.2 989 50.7
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.4e-211 740.7 987 48.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.3e-211 740.0 955 51.0
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 5.2e-211 738.8 987 49.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.8e-210 735.3 851 52.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 7.5e-210 734.9 963 48.8
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.6e-207 727.2 984 49.1
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.7e-207 726.5 1152 44.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 7.8e-207 724.9 961 47.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.7e-206 723.8 1034 47.5
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.3e-206 723.4 966 49.1
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 1.9e-205 720.3 977 47.8
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.3e-205 719.2 982 49.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.8e-204 716.5 1029 47.8
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.8e-204 716.5 974 49.4
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 3.6e-204 716.1 965 49.0
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 6.2e-204 715.3 1038 47.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.8e-203 711.8 988 48.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 6.8e-203 711.8 967 50.9
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.2e-202 711.1 967 49.5
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.4e-202 709.1 863 52.0
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 8.3e-201 704.9 1044 46.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.1e-200 704.5 880 51.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.4e-200 704.1 959 49.6
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.4e-200 703.4 1031 47.2
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.2e-200 703.0 980 48.3
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 5.4e-200 702.2 971 48.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 9.2e-200 701.4 983 48.4
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.6e-199 699.1 977 49.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.6e-199 699.1 970 49.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.7e-198 697.2 975 46.8
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-198 697.2 971 48.5
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 5.1e-198 695.7 970 49.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.6e-198 694.9 976 49.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.9e-197 693.7 975 48.9
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-197 693.3 970 49.4
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.2e-196 688.7 989 47.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-195 687.6 969 48.7
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.8e-195 687.2 950 48.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.1e-195 686.4 953 48.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-195 686.0 969 48.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.9e-193 679.1 1005 45.9
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.1e-192 677.9 975 47.6
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.1e-192 675.2 981 47.1
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.2e-192 674.9 981 47.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.6e-190 668.7 981 46.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-189 667.9 1004 45.6
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.9e-189 667.2 852 50.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 4.3e-189 666.0 987 47.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.3e-189 665.2 1000 45.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 7.3e-189 665.2 966 46.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.1e-187 661.4 862 48.8
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 3.1e-187 659.8 988 45.9
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.0e-186 657.1 979 46.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.4e-184 650.2 984 46.2
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 3.5e-183 646.4 1034 43.9
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.0e-182 644.8 1008 45.0
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.3e-182 643.7 891 46.7
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 4.3e-181 639.4 971 44.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 9.6e-181 638.3 967 44.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.8e-180 636.7 871 47.1
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 8.1e-180 635.2 967 44.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.4e-179 633.6 950 44.9
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.0e-179 632.9 961 44.6
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 9.0e-179 631.7 970 44.2
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-178 631.3 1024 44.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.6e-178 630.2 960 43.2
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.4e-178 629.4 1000 43.5
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 9.9e-178 628.2 873 47.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.9e-177 626.7 972 43.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.8e-177 626.3 978 45.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.4e-176 624.4 970 43.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.4e-176 624.4 969 45.0
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.2e-176 623.2 962 43.6
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 7.1e-176 622.1 967 44.2
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 7.1e-176 622.1 967 44.2
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.8e-175 618.6 921 45.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.0e-174 618.2 953 46.0
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.6e-174 615.5 962 43.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 3.3e-173 613.2 966 44.0
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.6e-173 611.7 1006 42.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.8e-171 607.4 973 42.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 2.4e-171 607.1 1033 42.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.6e-170 603.6 1032 41.5
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.8e-169 599.7 987 43.1
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 8.7e-166 588.6 991 42.4
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-163 580.5 949 43.7
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.4e-162 576.6 962 41.3
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.6e-162 575.5 889 44.2
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.2e-161 573.9 889 44.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 4.9e-161 572.8 949 41.9
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 4.2e-160 569.7 865 46.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 9.3e-160 568.5 951 42.9
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-159 568.2 842 45.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.0e-158 563.5 985 41.6
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.8e-150 537.7 957 40.5
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 3.1e-147 526.9 858 43.4
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 7.2e-144 515.8 985 40.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.8e-142 511.1 836 43.7
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.7e-140 503.4 979 40.4
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.2e-136 490.3 976 39.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.0e-118 432.2 833 38.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 5.3e-115 419.9 913 36.1
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.2e-114 418.7 872 38.3
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.2e-112 410.6 1036 34.2
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.2e-112 410.6 1036 34.2
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.2e-100 371.3 590 45.3
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.6e-96 356.7 706 39.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.4e-94 352.1 852 34.5
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.9e-91 341.7 322 60.9
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 4.1e-91 340.5 368 56.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.2e-75 287.7 284 56.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-73 282.7 323 53.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.1e-70 272.7 973 29.2
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.2e-69 269.2 382 46.9
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.1e-64 252.7 438 44.1
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.1e-63 248.4 250 58.4
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 3.4e-61 241.1 467 38.3
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 4.3e-48 197.6 137 76.6
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 6.2e-47 193.7 271 43.9
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.7e-34 151.8 220 47.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 7.9e-34 150.2 187 44.9
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.3e-32 144.8 184 50.0
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.6e-31 142.5 199 48.2
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-31 142.1 144 60.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 1.1e-30 139.8 140 60.7
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.5e-27 127.5 165 49.7
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 7.9e-26 123.6 86 73.3
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 6.7e-25 120.6 157 45.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.0e-24 119.0 144 45.1
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 4.1e-22 111.3 79 72.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 9.4e-19 100.1 71 71.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 4.7e-18 97.8 89 57.3
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 6.1e-18 97.4 72 65.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 2.3e-17 95.5 70 70.0
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 5.1e-17 94.4 84 59.5
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 8.8e-17 93.6 89 56.2
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.2e-15 89.0 60 80.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 2.2e-15 89.0 119 46.2
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 3.1e-14 85.1 59 69.5
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.9e-13 80.9 105 45.7
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 7.7e-13 80.5 86 53.5
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-12 78.6 113 46.0
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 3.2e-11 75.1 60 63.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.2e-10 73.2 135 43.0
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.6e-10 72.8 128 39.1
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 8.0e-10 70.5 126 38.9
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 6.7e-09 67.4 100 49.0
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 8.8e-09 67.0 92 44.6
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.1e-08 66.6 87 47.1
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 4.4e-08 64.7 62 50.0
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 9.7e-08 63.5 73 49.3
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 9.7e-08 63.5 96 44.8
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 2.8e-07 62.0 60 50.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.8e-06 59.3 75 40.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 7.0e-06 57.4 55 50.9
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.1e-06 57.0 48 64.6


User provided reference genes

Program Settings