Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.5e-194 682.6 323 100.0
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.3e-169 599.7 320 87.2
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.7e-169 599.4 323 86.7
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.9e-168 595.9 325 84.0
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 7.8e-167 590.5 322 86.0
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 7.8e-167 590.5 324 84.6
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.3e-166 589.0 321 84.1
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.1e-165 586.6 325 83.4
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.5e-165 585.5 322 82.9
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 2.5e-165 585.5 321 84.1
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.3e-165 585.1 328 83.5
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 4.3e-165 584.7 329 83.3
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 5.6e-165 584.3 322 83.2
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 5.6e-165 584.3 308 87.0
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.3e-165 583.9 326 82.8
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.1e-164 582.4 324 84.3
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.8e-164 582.0 326 82.2
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 4.7e-164 581.3 322 84.2
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 4.7e-164 581.3 327 83.8
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.2e-164 580.9 323 83.9
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 6.2e-164 580.9 325 82.2
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 8.1e-164 580.5 317 83.3
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 8.1e-164 580.5 322 85.1
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 8.1e-164 580.5 321 83.2
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.1e-163 580.1 320 82.8
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-163 580.1 320 82.8
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.8e-163 579.3 323 83.9
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.8e-163 579.3 321 83.2
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.4e-163 578.9 323 83.9
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 3.1e-163 578.6 324 82.7
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 5.2e-163 577.8 319 81.2
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 5.2e-163 577.8 322 82.9
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 6.9e-163 577.4 327 83.8
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 6.9e-163 577.4 318 83.6
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 6.9e-163 577.4 322 83.2
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 8.9e-163 577.0 326 81.9
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 1.5e-162 576.2 324 82.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.5e-162 576.2 323 82.0
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 2.6e-162 575.5 309 85.1
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 2.6e-162 575.5 322 82.9
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.6e-162 575.5 316 83.5
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 3.4e-162 575.1 316 84.2
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.7e-161 572.8 325 81.5
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 2.2e-161 572.4 315 84.4
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.2e-161 572.4 322 81.7
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 2.2e-161 572.4 319 83.4
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.9e-161 572.0 322 82.3
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.8e-161 571.6 321 82.6
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.4e-161 570.9 321 82.2
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 6.4e-161 570.9 321 82.2
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.4e-161 570.9 320 82.8
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 8.4e-161 570.5 316 82.9
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 8.4e-161 570.5 316 82.9
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.1e-160 570.1 327 81.7
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.1e-160 570.1 320 82.2
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.4e-160 569.7 318 81.8
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.9e-160 569.3 322 81.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 1.9e-160 569.3 322 81.1
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.2e-160 568.5 318 83.3
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 3.2e-160 568.5 323 81.1
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 4.2e-160 568.2 323 82.0
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 4.2e-160 568.2 325 81.2
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.4e-160 567.8 318 82.4
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 5.4e-160 567.8 323 81.7
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 1.2e-159 566.6 322 82.0
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.2e-159 566.6 316 82.3
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.2e-159 566.6 316 82.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.1e-159 565.8 323 80.8
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 2.7e-159 565.5 320 80.9
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 2.7e-159 565.5 317 81.1
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 2.7e-159 565.5 317 81.1
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 2.7e-159 565.5 322 82.0
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 3.5e-159 565.1 326 81.3
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 4.6e-159 564.7 319 82.1
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 6.0e-159 564.3 316 81.0
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.0e-158 563.5 321 81.0
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 1.0e-158 563.5 315 82.9
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.0e-158 563.5 316 82.0
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.7e-158 562.8 327 81.7
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.7e-158 562.8 313 82.1
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 6.6e-158 560.8 315 82.2
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 6.6e-158 560.8 315 82.2
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 6.6e-158 560.8 321 80.1
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.9e-157 559.3 314 81.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 2.5e-157 558.9 313 81.8
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 3.3e-157 558.5 322 79.5
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.3e-156 556.6 380 70.3
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 2.1e-156 555.8 318 81.8
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.8e-156 555.4 315 81.6
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.8e-156 555.4 315 81.6
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.6e-156 555.1 324 81.2
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 4.8e-156 554.7 311 81.0
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.1e-155 553.5 316 81.6
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.4e-155 552.4 301 85.0
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 4.0e-155 551.6 322 78.9
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 6.9e-155 550.8 318 80.2
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 9.0e-155 550.4 304 84.5
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 3.4e-154 548.5 319 79.9
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.9e-153 545.4 318 79.2
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 6.4e-153 544.3 318 79.6
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 7.1e-152 540.8 322 76.7
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 9.3e-152 540.4 317 78.2
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.7e-151 538.9 317 77.9
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 3.5e-151 538.5 320 78.4
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 7.4e-149 530.8 336 74.7
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.6e-146 522.3 279 85.3
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 6.0e-143 511.1 329 72.3
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.3e-142 509.2 312 74.4
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 4.8e-140 501.5 310 75.2
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-138 496.1 306 77.8
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.2e-137 492.7 296 74.7
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 2.5e-133 479.2 265 82.3
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 8.2e-132 474.2 314 68.2
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.1e-131 471.9 279 78.9
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 9.3e-128 460.7 305 68.2
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 9.3e-128 460.7 308 67.2
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.5e-125 452.6 308 65.9
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.5e-125 452.6 308 65.9
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.8e-124 448.4 338 64.5
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 9.4e-120 434.1 251 78.5
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 5.0e-113 411.8 309 59.9
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.7e-108 396.7 230 80.9
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 5.5e-104 381.7 317 56.5
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 8.0e-95 351.3 246 66.7
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.4e-91 340.5 215 74.0
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 8.6e-89 331.3 315 50.8
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.3e-80 302.8 344 43.0
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.4e-75 286.6 364 40.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 6.8e-54 215.3 123 76.4
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 5.3e-30 136.0 82 80.5
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 6.9e-30 135.6 89 73.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.2e-20 104.0 75 70.7
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.9e-20 103.6 68 70.6
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 6.9e-14 82.4 47 78.7
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 4.5e-13 79.7 52 75.0
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 6.5e-12 75.9 42 73.8
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.4e-11 74.7 41 78.0
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 8.2e-07 58.9 42 59.5


User provided reference genes

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