Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 3.7e-92 341.7 191 100.0
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 6.7e-25 118.2 77 80.5
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.6e-24 116.3 77 77.9
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 5.7e-24 115.2 75 82.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 7.4e-24 114.8 78 79.5
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 3.7e-23 112.5 77 80.5
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 6.3e-23 111.7 77 77.9
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 8.2e-23 111.3 77 77.9
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 8.2e-23 111.3 77 77.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.1e-22 110.9 76 80.3
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.1e-22 110.9 76 80.3
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.1e-22 110.9 75 81.3
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-22 110.5 76 80.3
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-22 110.5 75 81.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-22 110.5 75 81.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.8e-22 110.2 75 78.7
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 3.1e-22 109.4 72 81.9
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 5.3e-22 108.6 78 74.4
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 7.0e-22 108.2 77 74.0
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 9.1e-22 107.8 76 77.6
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 9.1e-22 107.8 75 78.7
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.2e-21 107.5 78 74.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.6e-21 107.1 77 75.3
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.0e-21 106.7 78 73.1
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 2.6e-21 106.3 78 73.1
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.6e-21 106.3 78 73.1
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 3.5e-21 105.9 74 75.7
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 3.5e-21 105.9 77 74.0
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 3.5e-21 105.9 76 77.6
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.5e-21 105.5 77 74.0
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 7.7e-21 104.8 78 73.1
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 7.7e-21 104.8 78 73.1
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 7.7e-21 104.8 78 73.1
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 7.7e-21 104.8 77 75.3
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 7.7e-21 104.8 78 73.1
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.7e-20 103.6 77 74.0
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.7e-20 103.6 64 87.5
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 2.2e-20 103.2 73 76.7
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.8e-20 102.4 78 73.1
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 5.0e-20 102.1 73 75.3
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.0e-20 102.1 76 71.1
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 5.0e-20 102.1 76 71.1
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 6.5e-20 101.7 78 74.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 8.5e-20 101.3 75 76.0
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.1e-19 100.9 73 74.0
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 1.1e-19 100.9 73 74.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 1.1e-19 100.9 73 74.0
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.1e-19 100.9 70 80.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.1e-19 100.9 71 78.9
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.1e-19 100.9 77 71.4
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.1e-19 100.9 71 77.5
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.5e-19 100.5 76 73.7
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.5e-19 100.5 73 74.0
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.9e-19 100.1 78 69.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.9e-19 100.1 77 71.4
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.9e-19 100.1 76 72.4
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 2.5e-19 99.8 77 71.4
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 2.5e-19 99.8 73 74.0
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 2.5e-19 99.8 77 71.4
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 2.5e-19 99.8 73 74.0
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.5e-19 99.8 74 73.0
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.5e-19 99.8 72 75.0
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 2.5e-19 99.8 73 74.0
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 2.5e-19 99.8 77 71.4
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 2.5e-19 99.8 77 71.4
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 2.5e-19 99.8 77 71.4
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 3.2e-19 99.4 73 74.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.2e-19 99.0 75 72.0
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 4.2e-19 99.0 78 70.5
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 4.2e-19 99.0 78 66.7
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 4.2e-19 99.0 79 70.9
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 4.2e-19 99.0 79 72.2
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 4.2e-19 99.0 77 71.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 4.2e-19 99.0 72 73.6
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 4.2e-19 99.0 71 74.6
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 5.5e-19 98.6 77 71.4
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 5.5e-19 98.6 73 74.0
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 5.5e-19 98.6 77 70.1
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 7.2e-19 98.2 77 71.4
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 7.2e-19 98.2 76 71.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 9.4e-19 97.8 77 70.1
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.4e-19 97.8 77 70.1
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 9.4e-19 97.8 72 72.2
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.2e-18 97.4 73 74.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.6e-18 97.1 77 68.8
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.6e-18 97.1 73 72.6
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 3.6e-18 95.9 78 71.8
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 3.6e-18 95.9 73 72.6
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 3.6e-18 95.9 73 72.6
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 3.6e-18 95.9 78 65.4
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 6.1e-18 95.1 74 70.3
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 6.1e-18 95.1 71 74.6
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 6.1e-18 95.1 69 76.8
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 8.0e-18 94.7 75 70.7
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.0e-17 94.4 76 68.4
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.4e-17 94.0 70 74.3
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.4e-17 94.0 66 77.3
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.4e-17 94.0 77 71.4
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.8e-17 93.6 71 70.4
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 3.0e-17 92.8 68 75.0
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 4.0e-17 92.4 76 67.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 4.0e-17 92.4 66 74.2
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 4.0e-17 92.4 72 72.2
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 5.2e-17 92.0 74 70.3
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 8.8e-17 91.3 76 67.1
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.2e-16 90.9 76 71.1
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 2.6e-16 89.7 76 69.7
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 4.4e-16 89.0 77 66.2
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 5.7e-16 88.6 66 71.2
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 7.5e-16 88.2 83 67.5
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.7e-15 87.0 67 71.6
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.7e-15 87.0 67 71.6
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.2e-15 86.7 77 64.9
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 3.7e-15 85.9 77 66.2
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.8e-14 83.6 103 53.4
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 5.3e-14 82.0 77 62.3
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.6e-13 80.5 65 67.7
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.5e-13 79.0 78 62.8
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 4.2e-11 72.4 58 70.7
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 4.2e-11 72.4 52 75.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.4e-09 67.4 62 64.5
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.8e-09 67.0 74 55.4
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.8e-09 67.0 76 53.9
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.2e-09 65.5 62 62.9
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 6.8e-09 65.1 66 62.1
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 4.4e-08 62.4 64 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 9.8e-08 61.2 65 58.5


User provided reference genes

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