Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 5.6e-133 478.0 319 100.0
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.4e-112 409.5 318 86.8
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.2e-112 408.7 318 86.8
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.0e-110 404.1 318 85.2
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 2.8e-108 396.0 319 84.6
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 4.8e-108 395.2 325 83.7
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 8.1e-108 394.4 327 83.5
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 2.4e-107 392.9 319 84.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 4.0e-107 392.1 319 83.1
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.5e-106 390.2 325 82.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 2.2e-105 386.3 317 83.3
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 2.2e-105 386.3 318 83.3
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 8.4e-105 384.4 318 82.1
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 4.6e-103 378.6 320 81.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 6.7e-102 374.8 318 81.8
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.3e-101 372.5 309 85.1
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 4.3e-101 372.1 319 81.2
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 1.3e-100 370.5 319 81.2
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 4.8e-100 368.6 317 81.4
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 8.1e-100 367.9 317 80.1
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 3.1e-99 365.9 317 80.8
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 3.1e-99 365.9 317 80.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 2.6e-98 362.8 307 83.1
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 3.4e-98 362.5 317 79.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 4.9e-97 358.6 317 79.8
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.3e-94 349.7 317 80.8
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 8.7e-94 347.8 318 79.2
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 5.7e-93 345.1 319 78.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.4e-93 344.7 309 79.6
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.1e-92 343.2 309 79.3
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 2.8e-92 342.8 319 78.7
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 4.1e-91 339.0 318 78.3
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.0e-90 336.7 317 79.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.8e-89 332.4 319 75.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 5.5e-88 328.6 318 77.7
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 7.2e-88 328.2 317 78.5
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 5.1e-86 322.0 319 75.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.6e-84 317.0 319 74.9
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.7e-84 315.8 317 75.1
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 4.8e-84 315.5 280 83.9
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 6.9e-83 311.6 318 75.2
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.2e-81 306.6 318 74.5
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 5.5e-80 302.0 306 76.5
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.2e-80 301.6 318 74.2
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 9.4e-80 301.2 317 73.8
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 3.0e-78 296.2 317 72.6
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 3.7e-76 289.3 318 72.3
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.4e-75 287.3 276 77.5
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 4.1e-75 285.8 317 71.9
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 5.0e-73 278.9 317 71.9
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.4e-72 277.3 315 67.9
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.7e-71 273.1 319 70.5
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.7e-71 273.1 319 70.5
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 7.9e-71 271.6 307 71.0
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 3.0e-70 269.6 317 68.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 3.0e-70 269.6 251 85.3
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 2.6e-69 266.5 252 84.1
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 9.7e-69 264.6 254 84.3
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 6.3e-68 261.9 254 83.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 8.2e-68 261.5 253 83.8
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.1e-67 261.2 253 81.0
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.1e-67 261.2 244 88.1
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.8e-67 260.4 253 82.2
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 2.4e-67 260.0 254 83.5
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 4.1e-67 259.2 255 83.1
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 7.0e-67 258.5 253 82.2
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.2e-66 257.7 254 80.7
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 2.0e-66 256.9 248 82.7
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 4.5e-66 255.8 252 82.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 5.9e-66 255.4 319 66.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 1.0e-65 254.6 244 86.9
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.9e-65 253.1 244 84.0
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.9e-65 253.1 252 81.7
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 3.8e-65 252.7 249 82.7
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 3.8e-65 252.7 318 67.3
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 8.5e-65 251.5 319 66.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.1e-64 251.1 249 82.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.1e-64 251.1 249 82.3
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.9e-64 250.4 251 82.5
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 5.5e-64 248.8 249 84.3
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 251 80.5
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 9.4e-64 248.1 252 81.7
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.6e-63 247.3 146 75.3
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 3.6e-63 246.1 143 75.5
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.6e-63 246.1 145 76.6
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 4.7e-63 245.7 252 80.6
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.2e-62 242.3 145 75.2
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 6.7e-62 241.9 253 79.8
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 6.7e-62 241.9 253 79.8
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 6.7e-62 241.9 253 79.8
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 6.7e-62 241.9 253 79.8
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 6.7e-62 241.9 253 79.8
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 6.7e-62 241.9 252 80.2
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 6.7e-62 241.9 143 74.8
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.8e-62 241.5 145 75.2
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-61 239.6 145 72.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-61 239.6 145 72.4
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.3e-61 239.6 251 80.5
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.7e-61 238.8 318 66.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 9.7e-61 238.0 144 77.1
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 74.1
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 75.0
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 2.4e-59 233.4 332 53.9
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.6e-58 230.7 146 72.6
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 2.7e-58 229.9 143 69.9
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.0e-57 228.0 318 62.6
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.0e-57 228.0 143 69.2
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.3e-57 227.6 143 72.0
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.9e-57 226.5 143 71.3
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.9e-57 226.5 143 71.3
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.8e-57 226.1 143 70.6
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-56 223.0 143 69.9
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 4.4e-53 212.6 208 81.2
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 8.3e-52 208.4 318 61.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.2e-49 200.3 309 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 9.4e-48 194.9 305 62.6
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.2e-47 194.5 306 63.7
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.6e-45 186.8 144 59.7
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.7e-45 185.7 305 43.0
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.1e-43 181.4 115 65.2
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.4e-43 180.3 93 86.0
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 2.3e-41 173.7 143 58.0
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.1e-39 165.6 106 69.8
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 1.3e-33 147.9 323 49.2
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.8e-31 140.2 314 30.6
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.2e-31 139.0 93 66.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.9e-28 130.2 114 58.8
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.4e-27 127.1 314 29.3
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 1.3e-12 78.2 111 42.3
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 1.4e-11 74.7 77 50.6
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 3.2e-11 73.6 120 39.2
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 9.2e-11 72.0 73 50.7
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 4.6e-10 69.7 87 41.4
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.0e-09 68.6 87 46.0
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.1e-08 65.1 36 72.2
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 5.6e-08 62.8 61 49.2
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.2e-07 61.6 71 40.8
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 1.6e-07 61.2 76 39.5
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 2.1e-07 60.8 38 65.8
ATR0829G129 Amborella trichopoda HOM05D050206 ORTHO05D038281 3.1e-06 57.0 312 24.7
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 6.8e-06 55.8 76 35.5


User provided reference genes

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