Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 1.7e-218 762.7 482 100.0
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.2e-112 410.2 408 54.2
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 1.1e-111 407.9 426 64.6
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 2.7e-107 393.3 404 62.9
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 3.0e-106 389.8 453 49.4
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 2.0e-105 387.1 453 58.5
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 2.0e-105 387.1 451 55.9
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 9.7e-105 384.8 442 50.0
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 1.1e-103 381.3 432 60.4
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 1.8e-103 380.6 408 54.9
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 9.1e-103 378.3 436 50.0
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 1.2e-102 377.9 438 50.2
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 1.0e-101 374.8 378 64.0
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 2.9e-101 373.2 454 59.0
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 8.5e-101 371.7 459 48.4
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 1.0e-98 364.8 388 51.0
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 4.0e-98 362.8 420 48.3
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 5.2e-98 362.5 452 47.6
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 2.2e-96 357.1 382 62.6
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 8.3e-96 355.1 403 50.1
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 2.4e-95 353.6 376 49.5
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 7.0e-95 352.1 388 54.6
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 2.7e-94 350.1 447 44.7
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 5.0e-93 345.9 423 46.1
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 1.2e-91 341.3 432 48.4
TAR636G0827 Trochodendron aralioides HOM05D005956 ORTHO05D007197 4.7e-91 339.3 316 70.9
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 6.1e-91 339.0 397 55.7
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 8.8e-90 335.1 440 45.7
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 1.5e-89 334.3 398 46.0
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 2.6e-89 333.6 385 60.8
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 2.6e-89 333.6 407 49.6
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 7.5e-89 332.0 449 45.7
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 3.7e-88 329.7 426 46.2
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 1.1e-87 328.2 446 44.2
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.1e-87 326.2 437 45.5
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.1e-87 326.2 437 45.8
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 5.4e-87 325.9 590 37.8
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 1.6e-86 324.3 453 43.3
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 2.0e-86 323.9 441 44.4
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 2.0e-86 323.9 410 45.9
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 7.7e-86 322.0 439 56.0
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.0e-85 321.6 437 45.3
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 1.3e-85 321.2 400 56.0
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.7e-85 320.9 436 44.3
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 2.3e-85 320.5 374 59.6
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 2.9e-85 320.1 410 46.1
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 5.0e-85 319.3 375 47.2
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 5.0e-85 319.3 375 47.2
Cpa.g.sc176.24 Carica papaya HOM05D005956 ORTHO05D007197 6.6e-85 318.9 444 50.5
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 2.1e-83 313.9 386 58.8
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 4.7e-83 312.8 445 43.1
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 4.7e-83 312.8 453 43.0
C06p52830 Brassica napus HOM05D000309 ORTHO05D007197 1.4e-82 311.2 431 51.7
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.5e-81 307.8 446 51.3
A07p44100 Brassica napus HOM05D000309 ORTHO05D007197 4.4e-81 306.2 431 52.2
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 9.8e-81 305.1 396 52.5
BolC6t40300H Brassica oleracea HOM05D000163 ORTHO05D000219 1.3e-80 304.7 431 54.5
BcaC08g47440 Brassica carinata HOM05D005956 ORTHO05D007197 1.7e-80 304.3 431 54.5
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 2.2e-80 303.9 449 55.7
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 3.7e-80 303.1 444 44.4
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 4.9e-80 302.8 381 54.3
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 6.3e-80 302.4 430 51.6
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 1.4e-79 301.2 475 48.2
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 9.2e-79 298.5 373 45.8
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 1.2e-78 298.1 452 42.7
BcaB03g16055 Brassica carinata HOM05D005956 ORTHO05D007197 1.6e-78 297.7 437 49.7
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 1.6e-78 297.7 424 43.4
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 1.6e-78 297.7 398 45.2
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 3.5e-78 296.6 373 45.8
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 3.5e-78 296.6 428 52.1
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 3.9e-77 293.1 457 40.7
FvH4_4g20560 Fragaria vesca HOM05D005956 ORTHO05D007197 5.6e-76 289.3 345 48.7
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 2.1e-75 287.3 396 42.4
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 2.1e-75 287.3 391 45.0
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 3.6e-75 286.6 375 45.6
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 5.2e-74 282.7 398 43.0
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 6.8e-74 282.3 379 43.8
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 8.3e-72 275.4 400 43.0
SalBow8G3086 Salvia bowleyana HOM05D005956 ORTHO05D007197 7.0e-71 272.3 441 51.0
unitig_578.g15928 Utricularia gibba HOM05D005956 ORTHO05D007197 7.8e-70 268.9 415 38.1
Atru.chr1.2601 Acer truncatum HOM05D005956 ORTHO05D007197 8.6e-69 265.4 308 49.4
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 3.6e-67 260.0 387 52.5
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 3.6e-67 260.0 236 60.6
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 3.6e-67 260.0 373 40.8
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 2.3e-66 257.3 378 56.3
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 3.1e-66 256.9 445 45.4
Thhalv10018313m.g Eutrema salsugineum HOM05D005956 ORTHO05D007197 2.0e-65 254.2 339 59.3
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 2.6e-65 253.8 455 45.9
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.3e-61 241.5 452 46.9
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 1.9e-60 237.7 314 44.9
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 6.2e-59 232.6 377 39.5
Dinv08767 Davidia involucrata HOM05D005956 ORTHO05D007197 4.0e-58 229.9 258 68.2
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-57 228.0 405 47.9
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 7.6e-57 225.7 385 38.4
HPP92_000245 Vanilla planifolia HOM05D005956 ORTHO05D007197 1.4e-55 221.5 443 35.9
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 3.2e-55 220.3 315 54.0
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 1.5e-52 211.5 387 36.4
Hma1.2p1_1111F.1_g258480 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 1.9e-52 211.1 277 56.3
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 3.3e-52 210.3 374 35.8
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 8.1e-51 205.7 381 36.5
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 1.4e-47 194.9 317 41.0
MBI16_g37212_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.4e-47 194.9 265 61.9
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 9.3e-47 192.2 295 43.1
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 1.2e-46 191.8 338 39.3
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.2e-46 191.8 276 43.5
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 6.0e-46 189.5 378 34.7
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 9.0e-42 175.6 214 47.2
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 9.0e-42 175.6 214 47.2
MD09G1167300 Malus domestica HOM05D005956 ORTHO05D007197 8.7e-37 159.1 158 57.6
MBI16_g00686_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.8e-34 151.4 201 66.2
AagrBONN_evm.TU.Sc2ySwM_368.2861 Anthoceros agrestis HOM05D005956 ORTHO05D007197 1.1e-28 132.1 377 38.5
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 4.0e-26 123.6 213 35.7
Mapoly0216s0005 Marchantia polymorpha HOM05D005956 ORTHO05D007197 4.6e-22 110.2 224 36.2
arahy.Tifrunner.gnm1.ann1.X8CU4B Arachis hypogaea HOM05D005956 ORTHO05D007197 6.9e-18 96.3 87 51.7
CBR_g20999 Chara braunii HOM05D005956 ORTHO05D001299 2.9e-16 90.9 201 30.3
Glyma.06G230200 Glycine max HOM05D005956 ORTHO05D007197 1.4e-15 88.6 74 55.4
MD09G1167200 Malus domestica HOM05D005956 ORTHO05D007197 1.4e-15 88.6 111 42.3
Psat0s410g0120 Pisum sativum HOM05D005956 ORTHO05D007197 1.4e-15 88.6 77 51.9
Gohir.A06G112700 Gossypium hirsutum HOM05D005956 ORTHO05D007197 1.9e-15 88.2 74 52.7
Nitab4.5_0005679g0030 Nicotiana tabacum HOM05D005956 ORTHO05D007197 1.9e-15 88.2 69 60.9
SGA_v2.0_scaffold1097G53840 Striga asiatica HOM05D005956 ORTHO05D007197 1.6e-14 85.1 81 46.9
arahy.Tifrunner.gnm1.ann1.85VD00 Arachis hypogaea HOM05D005956 ORTHO05D007197 3.5e-14 84.0 74 52.7
arahy.Tifrunner.gnm1.ann1.DBZ4H1 Arachis hypogaea HOM05D005956 ORTHO05D007197 7.9e-14 82.8 93 49.5
CDE02G0452 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 1.4e-10 72.0 175 33.1
Glyma.19G019500 Glycine max HOM05D005956 ORTHO05D007197 1.4e-10 72.0 85 47.1
arahy.Tifrunner.gnm1.ann1.X81K0T Arachis hypogaea HOM05D005956 ORTHO05D007197 2.7e-06 57.8 51 52.9


User provided reference genes

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