Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 3.8e-221 771.2 378 100.0
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 1.4e-146 523.5 365 67.4
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 6.8e-146 521.2 377 67.1
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 9.8e-145 517.3 371 66.6
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 2.2e-144 516.2 371 65.5
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 5.1e-141 505.0 378 64.3
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 7.3e-140 501.1 370 63.8
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 5.2e-138 495.0 370 65.7
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.5e-137 493.4 370 64.6
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 2.0e-137 493.0 369 64.8
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 4.4e-137 491.9 364 65.4
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 1.3e-136 490.3 375 63.2
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 1.3e-136 490.3 369 64.2
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 1.7e-136 490.0 382 62.3
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 1.7e-136 490.0 368 63.3
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 2.9e-136 489.2 370 64.9
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 1.1e-135 487.3 373 64.3
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.1e-135 487.3 371 60.9
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 1.1e-135 487.3 372 62.1
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 2.4e-135 486.1 359 65.5
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 2.4e-135 486.1 367 62.1
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 3.2e-135 485.7 371 62.5
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 4.1e-135 485.3 387 61.8
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 1.2e-134 483.8 370 62.7
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.5e-134 482.3 385 62.9
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 4.6e-134 481.9 374 62.8
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 4.6e-134 481.9 368 62.2
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 6.0e-134 481.5 370 62.4
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 1.0e-133 480.7 371 61.5
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.3e-133 479.6 369 62.3
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 3.0e-133 479.2 373 63.5
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 3.9e-133 478.8 369 62.6
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 5.1e-133 478.4 373 63.0
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 5.1e-133 478.4 370 60.8
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 1.1e-132 477.2 370 60.5
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.5e-132 476.1 372 63.4
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.3e-132 475.7 373 62.5
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 3.3e-132 475.7 371 60.6
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 3.3e-132 475.7 382 61.8
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 5.6e-132 474.9 372 61.6
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 5.6e-132 474.9 374 62.0
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 9.6e-132 474.2 383 61.6
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.6e-131 473.4 369 63.7
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.6e-131 473.4 371 60.9
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 2.1e-131 473.0 372 60.8
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 2.8e-131 472.6 371 60.4
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.4e-130 470.3 377 60.7
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 1.3e-128 463.8 373 61.9
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.3e-128 463.8 389 58.9
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 2.2e-128 463.0 372 60.5
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 3.8e-128 462.2 368 60.1
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 4.9e-128 461.8 367 61.9
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 1.4e-127 460.3 367 61.6
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 4.6e-126 455.3 376 57.7
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 1.0e-125 454.1 369 59.9
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 5.1e-125 451.8 369 60.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.1e-123 446.4 370 58.6
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 3.6e-123 445.7 366 58.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 6.2e-123 444.9 363 60.3
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-121 440.7 366 59.6
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 1.2e-121 440.7 374 58.3
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 3.8e-120 435.6 362 59.4
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 4.9e-120 435.3 371 57.4
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 4.9e-120 435.3 373 57.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.9e-119 433.3 354 59.3
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 3.2e-119 432.6 368 57.6
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.2e-118 430.6 373 58.7
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 1.2e-118 430.6 371 56.3
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 1.6e-118 430.3 382 56.0
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 4.6e-118 428.7 351 59.8
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.0e-117 426.0 355 59.4
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 7.4e-116 421.4 377 59.2
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 1.3e-115 420.6 394 55.1
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 2.8e-115 419.5 380 54.5
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 4.8e-115 418.7 386 58.0
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.4e-114 417.2 371 54.4
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 9.0e-114 414.5 366 56.3
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 4.2e-111 405.6 379 57.0
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.7e-104 383.6 375 49.1
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 5.1e-101 372.1 394 51.3
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 1.2e-97 360.9 241 70.1
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 3.4e-97 359.4 388 49.7
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 2.1e-94 350.1 305 57.0
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.6e-86 322.4 347 52.4
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 2.9e-80 303.1 376 42.6
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 7.9e-78 295.0 307 51.8
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 6.3e-75 285.4 223 64.6
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 3.2e-71 273.1 364 38.2
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 2.1e-70 270.4 367 39.0
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 2.4e-66 256.9 191 63.9
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 5.9e-65 252.3 208 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 3.8e-64 249.6 329 39.2
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 8.5e-64 248.4 190 65.3
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 9.8e-60 235.0 206 57.3
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 9.8e-60 235.0 219 52.5
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 4.5e-57 226.1 177 63.8
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 1.3e-56 224.6 172 64.5
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 2.3e-56 223.8 407 34.6
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 6.8e-53 212.2 186 58.6
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 7.5e-52 208.8 244 48.0
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.4e-50 203.8 210 53.8
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.4e-50 203.8 210 53.8
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 5.4e-50 202.6 248 44.8
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 1.2e-49 201.4 149 62.4
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-44 184.9 152 61.2
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 2.6e-36 157.1 126 59.5
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 3.4e-36 156.8 146 54.1
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 2.7e-33 147.1 144 50.0
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 2.7e-33 147.1 122 55.7
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 3.0e-32 143.7 101 62.4
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 3.9e-32 143.3 140 51.4
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 5.6e-31 139.4 261 36.4
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 1.6e-25 121.3 173 41.0
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 2.7e-25 120.6 101 49.5
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.3e-24 118.2 357 30.0
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 4.0e-21 106.7 98 57.1
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.2e-20 105.1 78 64.1
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.5e-20 104.8 492 23.6
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.3e-15 85.9 73 60.3
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 8.1e-14 82.4 100 45.0
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.1e-13 80.5 182 36.8
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 6.9e-13 79.3 61 55.7
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 7.6e-12 75.9 158 36.7
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 2.1e-06 57.8 72 47.2


User provided reference genes

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