Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 5.3e-37 157.5 102 100.0
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 6.4e-14 80.9 66 56.1
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.8e-13 79.3 73 52.1
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 7.0e-13 77.4 48 62.5
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 7.0e-13 77.4 68 54.4
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 2.7e-12 75.5 68 52.9
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 3.5e-12 75.1 66 57.6
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 7.8e-12 73.9 48 60.4
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 1.0e-11 73.6 72 48.6
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.3e-11 72.4 74 48.6
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 2.3e-11 72.4 74 47.3
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 2.3e-11 72.4 74 47.3
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 3.9e-11 71.6 67 49.3
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 5.0e-11 71.2 48 58.3
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 6.6e-11 70.9 66 51.5
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 1.1e-10 70.1 46 58.7
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 1.1e-10 70.1 67 49.3
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 1.5e-10 69.7 66 51.5
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 1.9e-10 69.3 42 66.7
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 3.3e-10 68.6 68 50.0
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 3.3e-10 68.6 47 55.3
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 4.3e-10 68.2 67 50.7
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 4.3e-10 68.2 66 47.0
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 5.6e-10 67.8 67 46.3
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 5.6e-10 67.8 64 48.4
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 1.6e-09 66.2 43 60.5
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 1.6e-09 66.2 59 50.8
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 1.6e-09 66.2 76 43.4
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 1.6e-09 66.2 45 57.8
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 2.1e-09 65.9 67 49.3
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 2.1e-09 65.9 46 58.7
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 3.6e-09 65.1 45 53.3
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 3.6e-09 65.1 67 49.3
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 6.2e-09 64.3 47 55.3
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 6.2e-09 64.3 45 55.6
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 6.2e-09 64.3 64 48.4
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 6.2e-09 64.3 60 46.7
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 8.0e-09 63.9 46 56.5
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 1.1e-08 63.5 102 39.2
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 1.1e-08 63.5 47 57.4
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 1.1e-08 63.5 45 53.3
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 1.1e-08 63.5 66 42.4
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.4e-08 63.2 46 56.5
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 2.3e-08 62.4 63 44.4
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 2.3e-08 62.4 46 54.3
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 3.1e-08 62.0 42 57.1
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 3.1e-08 62.0 47 57.4
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 3.1e-08 62.0 47 57.4
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 3.1e-08 62.0 47 57.4
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 3.1e-08 62.0 47 57.4
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 4.0e-08 61.6 47 57.4
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 4.0e-08 61.6 45 55.6
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 4.0e-08 61.6 46 54.3
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 4.0e-08 61.6 79 44.3
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 4.0e-08 61.6 68 45.6
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 5.2e-08 61.2 46 58.7
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 5.2e-08 61.2 80 45.0
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 5.2e-08 61.2 80 45.0
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 5.2e-08 61.2 60 48.3
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 6.8e-08 60.8 45 55.6
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 8.9e-08 60.5 46 54.3
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.2e-07 60.1 44 56.8
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 2.0e-07 59.3 106 49.1
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 2.0e-07 59.3 77 44.2
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 2.0e-07 59.3 45 51.1
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 2.6e-07 58.9 45 48.9
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 2.6e-07 58.9 45 55.6
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 2.6e-07 58.9 44 52.3
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 2.6e-07 58.9 45 53.3
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 3.4e-07 58.5 44 59.1
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 3.4e-07 58.5 48 50.0
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 4.4e-07 58.2 44 59.1
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 4.4e-07 58.2 44 59.1
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 4.4e-07 58.2 46 50.0
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 4.4e-07 58.2 42 57.1
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 5.8e-07 57.8 77 45.5
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 5.8e-07 57.8 46 50.0
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 7.5e-07 57.4 70 41.4
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 1.7e-06 56.2 77 44.2
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 4.9e-06 54.7 62 41.9


User provided reference genes

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