Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 2.3e-154 548.9 280 100.0
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 8.1e-136 487.3 253 92.1
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.6e-134 480.7 280 88.2
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 2.2e-133 479.2 250 91.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.8e-133 478.4 250 91.2
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.9e-133 478.0 280 88.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 8.4e-133 477.2 248 91.9
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.4e-132 475.7 248 91.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.4e-132 475.7 250 91.6
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.2e-132 475.3 248 91.1
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 5.4e-132 474.6 248 91.5
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 9.2e-132 473.8 280 86.1
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 9.2e-132 473.8 253 89.7
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.2e-131 473.4 248 91.1
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.2e-131 473.4 246 92.3
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.6e-131 473.0 252 90.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.6e-131 473.0 252 90.1
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.1e-131 472.6 248 91.1
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.7e-131 472.2 248 91.1
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.7e-131 472.2 248 91.1
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.5e-131 471.9 250 90.4
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.5e-131 471.9 246 91.9
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.6e-131 471.5 252 89.3
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.6e-131 471.5 248 90.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 6.0e-131 471.1 255 89.0
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.0e-131 471.1 253 88.9
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 6.0e-131 471.1 252 89.3
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 6.0e-131 471.1 252 89.3
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 6.0e-131 471.1 244 91.8
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 6.0e-131 471.1 252 89.3
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 7.8e-131 470.7 252 90.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.0e-130 470.3 252 89.3
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.0e-130 470.3 248 90.3
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.0e-130 470.3 250 90.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.7e-130 469.5 253 88.5
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.7e-130 469.5 252 89.7
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.7e-130 469.5 250 90.0
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.3e-130 469.2 284 84.5
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-130 469.2 248 90.3
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.0e-130 468.8 250 88.8
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 3.0e-130 468.8 252 89.7
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 3.9e-130 468.4 255 88.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.9e-130 468.4 278 88.1
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 3.9e-130 468.4 248 89.9
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 5.1e-130 468.0 253 88.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.1e-130 468.0 280 87.1
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 6.6e-130 467.6 248 89.9
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.6e-130 467.6 252 88.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 8.7e-130 467.2 253 88.1
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.1e-129 466.8 250 89.2
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.5e-129 466.5 252 89.3
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.5e-129 466.5 248 91.5
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.5e-129 466.5 252 88.5
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.5e-129 466.5 250 89.2
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.9e-129 466.1 263 85.9
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.5e-129 465.7 242 93.0
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.5e-129 465.7 253 88.5
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.5e-129 465.7 248 89.5
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 281 86.5
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 281 86.5
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 2.5e-129 465.7 252 89.3
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.3e-129 465.3 248 88.7
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.3e-129 465.3 251 89.2
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.3e-129 464.9 270 88.1
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.3e-129 464.9 250 89.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 4.3e-129 464.9 248 88.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 5.6e-129 464.5 250 89.6
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 5.6e-129 464.5 280 84.6
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 7.3e-129 464.2 245 89.8
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 7.3e-129 464.2 248 88.7
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 9.6e-129 463.8 281 81.9
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 9.6e-129 463.8 250 89.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.3e-128 463.4 248 88.7
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.3e-128 463.4 248 88.7
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.3e-128 463.4 274 88.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.6e-128 463.0 253 87.7
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.8e-128 462.2 248 89.5
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 2.8e-128 462.2 250 88.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 6.2e-128 461.1 251 88.4
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 8.1e-128 460.7 281 84.7
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 8.1e-128 460.7 250 88.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.4e-127 459.1 252 88.1
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 4.0e-127 458.4 281 85.4
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.2e-126 456.8 270 83.7
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 1.2e-126 456.8 248 88.3
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.9e-125 452.2 249 87.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 8.4e-125 450.7 296 78.4
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 1.1e-124 450.3 250 87.6
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 2.4e-124 449.1 250 84.8
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.1e-121 440.3 252 86.5
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 4.3e-121 438.3 253 83.8
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 7.3e-121 437.6 242 85.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 3.1e-119 432.2 250 82.4
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 5.8e-118 427.9 228 91.2
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 4.2e-116 421.8 226 90.3
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.2e-115 420.2 260 81.2
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.6e-115 419.9 347 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.3e-114 416.8 243 82.3
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 5.6e-113 411.4 250 80.4
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.3e-112 410.2 250 78.0
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.3e-104 383.6 215 87.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 7.9e-99 364.4 191 92.1
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.3e-93 347.1 189 89.4
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.7e-93 346.7 240 70.4
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.7e-88 330.1 171 93.0
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-87 327.4 171 91.8
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.2e-86 323.9 181 87.8
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.6e-86 322.8 168 93.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.7e-80 303.5 183 82.5
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.3e-80 301.6 162 88.3
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.5e-77 291.6 183 77.0
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-76 290.0 164 87.8
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-75 286.6 164 85.4
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.1e-75 285.0 164 86.6
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.2e-72 276.6 145 93.1
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.7e-70 268.1 213 68.1
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.5e-68 263.1 147 88.4
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-68 262.7 170 76.5
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.2e-67 260.8 155 84.5
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.1e-67 260.0 149 85.2
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.0e-66 257.7 155 83.9
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.7e-64 250.4 156 78.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-59 233.8 148 78.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.0e-54 216.9 190 56.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-52 210.7 151 72.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.5e-52 209.9 141 75.9
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.7e-40 170.6 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.2e-40 170.2 167 57.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 2.9e-32 143.3 76 93.4
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 3.9e-29 132.9 186 46.2
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.8e-26 124.0 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.3e-24 117.9 93 63.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.9e-24 115.9 91 75.8
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.0e-17 94.0 55 78.2
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.8e-17 92.4 55 76.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.2e-15 86.7 50 78.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.1e-14 84.0 46 80.4


User provided reference genes

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