Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 2.6e-286 988.0 503 100.0
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 1.2e-166 590.5 499 60.9
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 5.1e-165 585.1 502 61.6
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 2.9e-152 542.7 460 60.9
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 6.5e-152 541.6 460 62.4
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 8.8e-149 531.2 454 61.7
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 1.1e-148 530.8 509 57.4
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.1e-146 524.2 504 57.1
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 2.4e-146 523.1 452 61.5
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 4.1e-146 522.3 452 61.1
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 6.9e-146 521.5 412 65.3
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.5e-145 520.4 566 52.1
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 3.4e-145 519.2 475 59.6
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 7.7e-145 518.1 460 60.0
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 3.8e-144 515.8 461 56.2
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 2.5e-143 513.1 427 62.3
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 3.2e-143 512.7 511 56.0
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 5.5e-143 511.9 401 65.8
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 7.2e-143 511.5 513 55.0
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 9.4e-143 511.1 502 55.2
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.7e-142 509.6 497 56.7
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 5.2e-141 505.4 493 55.0
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 6.7e-141 505.0 445 60.9
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.1e-140 504.2 452 58.2
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 2.6e-140 503.1 444 60.8
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 7.4e-140 501.5 456 56.8
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 1.3e-139 500.7 451 59.9
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 2.8e-139 499.6 453 59.6
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.4e-138 497.3 481 54.9
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 4.5e-137 492.3 516 53.7
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 4.5e-137 492.3 526 52.7
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 1.7e-136 490.3 439 58.5
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 2.2e-136 490.0 474 57.0
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 6.5e-136 488.4 458 57.2
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 8.5e-136 488.0 462 56.3
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 8.5e-136 488.0 472 55.9
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.5e-135 487.3 516 53.3
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 5.5e-135 485.3 454 56.2
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.6e-134 483.8 455 56.9
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 2.7e-134 483.0 461 56.8
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 4.7e-134 482.3 435 58.6
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 2.3e-133 479.9 450 57.6
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 1.5e-132 477.2 471 55.6
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 1.3e-131 474.2 542 51.3
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 2.2e-131 473.4 462 56.7
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 8.2e-131 471.5 502 53.6
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 7.0e-130 468.4 483 53.4
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 1.0e-128 464.5 416 58.9
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.9e-127 460.3 506 52.2
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 4.2e-127 459.1 504 52.4
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.1e-126 456.8 505 52.9
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 3.0e-125 453.0 505 52.3
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 1.2e-124 451.1 462 55.6
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 1.3e-123 447.6 380 60.5
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 2.2e-123 446.8 516 50.0
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 4.8e-123 445.7 362 64.4
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 8.3e-123 444.9 507 50.5
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 8.3e-123 444.9 462 54.8
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 1.8e-122 443.7 439 54.4
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 4.5e-121 439.1 496 52.2
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 5.9e-121 438.7 506 50.6
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 5.0e-120 435.6 401 60.1
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 6.5e-120 435.3 454 55.1
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 8.0e-118 428.3 408 55.9
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 1.4e-117 427.6 404 56.7
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 2.6e-116 423.3 511 48.7
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 3.5e-113 412.9 456 51.8
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 5.9e-113 412.1 488 49.4
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 2.3e-112 410.2 464 50.9
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 1.9e-111 407.1 498 48.4
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 4.7e-110 402.5 457 51.4
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 2.2e-107 393.7 446 51.3
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 2.2e-107 393.7 425 52.2
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 2.9e-107 393.3 463 48.4
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.6e-105 387.5 343 60.9
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 7.8e-105 385.2 363 55.9
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 1.7e-104 384.0 405 51.1
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.7e-104 384.0 453 50.6
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 2.3e-104 383.6 457 50.5
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 3.3e-103 379.8 503 48.5
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 1.2e-102 377.9 503 48.1
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 3.5e-97 359.8 307 63.2
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 1.0e-96 358.2 361 53.2
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 1.0e-96 358.2 317 60.3
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.9e-95 354.0 504 44.8
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.7e-91 340.9 378 49.7
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.8e-85 320.9 349 48.7
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 4.0e-85 319.7 319 55.2
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 2.6e-84 317.0 440 45.5
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 3.3e-79 300.1 353 48.7
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 2.1e-73 280.8 267 53.9
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 1.1e-69 268.5 274 52.6
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 4.5e-68 263.1 274 50.4
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.7e-67 261.2 204 67.6
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.2e-65 255.0 341 44.9
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 2.4e-61 240.7 278 47.8
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 2.1e-57 227.6 185 65.9
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 2.3e-56 224.2 186 64.5
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 3.9e-56 223.4 158 71.5
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.9e-47 194.5 192 51.0
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.5e-47 194.1 192 51.0
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 2.5e-47 194.1 322 39.8
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 9.7e-47 192.2 157 65.0
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 8.2e-46 189.1 206 51.0
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 6.9e-45 186.0 182 53.3
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 1.0e-43 182.2 279 42.3
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 2.5e-42 177.6 260 39.2
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 1.1e-39 168.7 152 56.6
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 3.7e-38 163.7 114 69.3
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 9.1e-37 159.1 363 35.5
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.6e-36 157.5 215 39.5
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 4.5e-36 156.8 249 41.0
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 5.9e-36 156.4 106 77.4
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 8.5e-35 152.5 143 57.3
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 2.5e-34 151.0 293 34.1
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 3.2e-34 150.6 165 53.9
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.4e-29 135.2 136 54.4
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 1.3e-27 128.6 178 40.4
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 2.6e-23 114.4 105 59.0
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 2.8e-22 110.9 136 40.4
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.0e-20 104.8 99 63.6
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.1e-17 94.7 77 64.9
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 1.1e-13 82.4 81 56.8
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 1.1e-13 82.4 105 42.9
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.8e-13 81.6 79 49.4
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 1.3e-11 75.5 82 43.9
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 3.6e-09 67.4 52 61.5
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.2e-08 63.5 47 59.6
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.2e-08 63.5 47 59.6
FAN16G0730 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.2e-07 62.4 67 49.3
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 1.7e-06 58.5 105 33.3


User provided reference genes

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