Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.1e-60 236.9 162 100.0
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.8e-31 139.8 81 80.2
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 4.1e-31 138.7 156 45.5
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.2e-27 127.1 155 51.6
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.1e-27 126.3 81 71.6
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 2.7e-27 125.9 81 70.4
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 2.3e-26 122.9 81 69.1
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 8.8e-26 120.9 80 71.2
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.5e-25 120.2 81 69.1
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 5.7e-25 118.2 81 67.9
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 7.5e-25 117.9 81 69.1
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 9.7e-25 117.5 80 65.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.3e-24 117.1 83 68.7
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 1.7e-24 116.7 83 63.9
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 1.7e-24 116.7 81 67.9
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.7e-24 116.7 81 70.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 2.2e-24 116.3 80 66.2
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.2e-24 116.3 206 34.0
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.2e-24 116.3 80 66.2
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 2.2e-24 116.3 80 66.2
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 3.7e-24 115.5 80 66.2
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.7e-24 115.5 81 66.7
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.7e-24 115.5 80 68.8
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.7e-24 115.5 83 66.3
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 4.8e-24 115.2 80 66.2
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 4.8e-24 115.2 80 67.5
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.8e-24 115.2 83 60.2
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.3e-24 114.8 83 66.3
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 6.3e-24 114.8 83 65.1
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 6.3e-24 114.8 156 40.4
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 8.2e-24 114.4 80 66.2
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 8.2e-24 114.4 81 65.4
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 8.2e-24 114.4 83 66.3
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.1e-23 114.0 83 59.0
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.1e-23 114.0 83 65.1
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.4e-23 113.6 83 63.9
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.4e-23 113.6 80 65.0
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 2.4e-23 112.8 83 63.9
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 2.4e-23 112.8 83 62.7
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 2.4e-23 112.8 83 66.3
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-23 112.8 83 66.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 2.4e-23 112.8 83 61.4
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.1e-23 112.5 81 65.4
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.1e-23 112.5 81 65.4
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 4.1e-23 112.1 83 62.7
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 5.3e-23 111.7 83 62.7
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.3e-23 111.7 83 57.8
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-23 111.7 83 65.1
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.3e-23 111.7 83 65.1
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 5.3e-23 111.7 76 67.1
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 7.0e-23 111.3 83 63.9
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 7.0e-23 111.3 81 66.7
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 9.1e-23 110.9 83 62.7
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 9.1e-23 110.9 81 64.2
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 9.1e-23 110.9 81 64.2
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.6e-22 110.2 80 61.2
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.6e-22 110.2 83 66.3
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.6e-22 110.2 80 66.2
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.0e-22 109.8 81 63.0
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 2.0e-22 109.8 83 63.9
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 2.7e-22 109.4 80 63.8
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.5e-22 109.0 83 59.0
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.5e-22 108.6 83 57.8
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 5.9e-22 108.2 80 63.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 5.9e-22 108.2 81 63.0
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 5.9e-22 108.2 79 63.3
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 7.7e-22 107.8 75 65.3
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 7.7e-22 107.8 80 61.2
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.0e-21 107.5 81 60.5
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.0e-21 107.5 81 60.5
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.0e-21 107.5 83 65.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.3e-21 107.1 83 60.2
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.3e-21 107.1 83 57.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.3e-21 107.1 80 63.8
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 2.2e-21 106.3 82 57.3
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.9e-21 105.9 83 55.4
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 3.8e-21 105.5 83 59.0
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 6.5e-21 104.8 81 59.3
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 6.5e-21 104.8 83 57.8
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.5e-20 103.6 83 57.8
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.9e-20 103.2 83 55.4
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 2.5e-20 102.8 79 58.2
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 4.2e-20 102.1 83 59.0
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 5.5e-20 101.7 83 55.4
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 5.5e-20 101.7 73 63.0
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 7.2e-20 101.3 83 54.2
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 9.4e-20 100.9 83 59.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.2e-19 100.5 83 59.0
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.2e-19 100.5 83 59.0
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 4.7e-19 98.6 73 61.6
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.1e-19 98.2 83 51.8
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.4e-18 97.1 80 53.8
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.4e-18 97.1 83 53.0
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.8e-18 96.7 83 54.2
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 2.3e-18 96.3 83 56.6
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.5e-17 93.6 83 55.4
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.0e-17 93.2 80 55.0
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.3e-16 90.5 83 51.8
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.2e-16 89.7 83 54.2
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 3.7e-16 89.0 83 51.8
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 4.8e-16 88.6 120 74.2
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.4e-15 87.0 59 69.5
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 3.5e-14 82.4 78 46.2
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 4.2e-12 75.5 48 75.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.1e-11 73.2 60 56.7
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 3.6e-11 72.4 80 45.0
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 6.1e-11 71.6 80 46.2
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.4e-10 70.5 48 66.7
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.8e-10 70.1 56 53.6
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 3.1e-07 59.3 83 41.0
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 5.4e-07 58.5 83 38.6


User provided reference genes

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