Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005770 Simmondsia chinensis HOM05D002859 ORTHO05D003120 2.0e-78 295.8 164 100.0
Sc13g0007890 Simmondsia chinensis HOM05D002859 ORTHO05D003120 2.1e-27 126.3 99 82.8
GSVIVG01037132001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.3e-21 106.3 54 87.0
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 1.1e-20 104.0 53 86.8
COL.COLO4_25054 Corchorus olitorius HOM05D002859 ORTHO05D003120 2.5e-20 102.8 53 83.0
Gohir.A02G088200 Gossypium hirsutum HOM05D002859 ORTHO05D003120 5.6e-20 101.7 53 81.1
Gohir.D02G103500 Gossypium hirsutum HOM05D002859 ORTHO05D003120 5.6e-20 101.7 53 81.1
Gorai.005G117600 Gossypium raimondii HOM05D002859 ORTHO05D003120 5.6e-20 101.7 53 81.1
Eucgr.F04091 Eucalyptus grandis HOM05D002859 ORTHO05D003120 1.6e-19 100.1 53 84.9
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 2.1e-19 99.8 55 81.8
TAR381G0145 Trochodendron aralioides HOM05D002859 ORTHO05D003120 2.1e-19 99.8 53 83.0
Ciclev10022444m.g Citrus clementina HOM05D002859 ORTHO05D003120 2.8e-19 99.4 53 83.0
CARHR064600 Cardamine hirsuta HOM05D002859 ORTHO05D003120 4.7e-19 98.6 53 81.1
Duzib177G0860 Durio zibethinus HOM05D002859 ORTHO05D003120 4.7e-19 98.6 53 81.1
Rhsim12G0001500 Rhododendron simsii HOM05D002859 ORTHO05D003120 4.7e-19 98.6 55 80.0
Carub.0002s1818 Capsella rubella HOM05D002859 ORTHO05D003120 6.2e-19 98.2 83 57.8
Lj7C415G8 Lonicera japonica HOM05D002859 ORTHO05D003120 6.2e-19 98.2 55 80.0
CSS0033199 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.1e-18 97.4 55 80.0
TWI12G1452 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 1.1e-18 97.4 53 79.2
EL10Ac1g01291 Beta vulgaris HOM05D002859 ORTHO05D003120 1.4e-18 97.1 53 79.2
Thhalv10019211m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 1.4e-18 97.1 53 79.2
AL2G30910 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 1.8e-18 96.7 53 77.4
Dinv22062 Davidia involucrata HOM05D002859 ORTHO05D003120 1.8e-18 96.7 54 81.5
Nn5g27200 Nelumbo nucifera HOM05D002859 ORTHO05D003120 1.8e-18 96.7 53 75.5
Aa31LG4G9230 Aethionema arabicum HOM05D002859 ORTHO05D003120 2.4e-18 96.3 53 77.4
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 2.4e-18 96.3 54 83.3
Atru.chr13.2591 Acer truncatum HOM05D002859 ORTHO05D003120 3.1e-18 95.9 53 77.4
Ah.05g170490 Amaranthus hybridus HOM05D002859 ORTHO05D003120 4.0e-18 95.5 88 58.0
AUR62013398 Chenopodium quinoa HOM05D002859 ORTHO05D003120 5.2e-18 95.1 53 79.2
AT1G71310 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 6.8e-18 94.7 82 58.5
MBI06_g47881_MAGBIO Magnolia biondii HOM05D002859 ORTHO05D003120 6.8e-18 94.7 53 73.6
Cpa.g.sc249.14 Carica papaya HOM05D002859 ORTHO05D003120 8.9e-18 94.4 52 80.8
A07p30790 Brassica napus HOM05D002859 ORTHO05D003120 1.2e-17 94.0 83 56.6
BraA07t30716Z Brassica rapa HOM05D002859 ORTHO05D003120 1.2e-17 94.0 83 56.6
Cc10_g16150 Coffea canephora HOM05D002859 ORTHO05D003120 1.2e-17 94.0 54 79.6
Potri.019G068500 Populus trichocarpa HOM05D002859 ORTHO05D003120 1.2e-17 94.0 53 73.6
Sabra19G0082000 Salix brachista HOM05D002859 ORTHO05D003120 1.2e-17 94.0 53 73.6
CiPaw.04G008400 Carya illinoinensis HOM05D002859 ORTHO05D003120 2.0e-17 93.2 98 52.0
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 2.0e-17 93.2 53 77.4
Nitab4.5_0000079g0100 Nicotiana tabacum HOM05D002859 ORTHO05D003120 2.0e-17 93.2 54 79.6
Nitab4.5_0004387g0010 Nicotiana tabacum HOM05D002859 ORTHO05D003120 2.0e-17 93.2 54 79.6
ATR1089G066 Amborella trichopoda HOM05D002859 ORTHO05D003120 2.6e-17 92.8 53 73.6
BcaC08g45785 Brassica carinata HOM05D002859 ORTHO05D003120 2.6e-17 92.8 53 75.5
C06p35690 Brassica napus HOM05D002859 ORTHO05D003120 2.6e-17 92.8 53 75.5
BolC6t38692H Brassica oleracea HOM05D002859 ORTHO05D003120 2.6e-17 92.8 53 75.5
MD05G1000800 Malus domestica HOM05D002859 ORTHO05D003120 3.4e-17 92.4 51 78.4
SalBow7G1103 Salvia bowleyana HOM05D002859 ORTHO05D003120 3.4e-17 92.4 55 76.4
CDE02G3179 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 4.4e-17 92.0 53 73.6
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 4.4e-17 92.0 51 72.5
Lsat_1_v5_gn_4_132200 Lactuca sativa HOM05D002859 ORTHO05D003120 4.4e-17 92.0 53 79.2
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 4.4e-17 92.0 51 78.4
vmacro00921 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 4.4e-17 92.0 54 72.2
vmacro00954 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 4.4e-17 92.0 54 72.2
BcaB03g15599 Brassica carinata HOM05D002859 ORTHO05D003120 5.8e-17 91.7 53 73.6
Solyc08g005060.3 Solanum lycopersicum HOM05D002859 ORTHO05D003120 7.6e-17 91.3 52 82.7
Phvul.011G003500 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 1.3e-16 90.5 54 74.1
Sp5g26480 Schrenkiella parvula HOM05D002859 ORTHO05D003120 1.3e-16 90.5 53 73.6
Sopen08g001080 Solanum pennellii HOM05D002859 ORTHO05D003120 1.3e-16 90.5 52 80.8
PSO782G5460 Papaver somniferum HOM05D002859 ORTHO05D003120 1.7e-16 90.1 52 71.2
PGSC0003DMG400001162 Solanum tuberosum HOM05D002859 ORTHO05D003120 1.7e-16 90.1 52 80.8
Actinidia01539 Actinidia chinensis HOM05D002859 ORTHO05D003120 2.2e-16 89.7 52 76.9
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 2.2e-16 89.7 54 72.2
MSTRG.25506 Avicennia marina HOM05D002859 ORTHO05D003120 2.9e-16 89.4 54 72.2
PSO063G7280 Papaver somniferum HOM05D002859 ORTHO05D003120 2.9e-16 89.4 52 71.2
FvH4_2g00170 Fragaria vesca HOM05D002859 ORTHO05D003120 3.8e-16 89.0 51 74.5
FAN21G0151 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.8e-16 89.0 51 74.5
FAN24G1423 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.8e-16 89.0 51 74.5
FAN25G0127 Fragaria x ananassa HOM05D002859 ORTHO05D003120 3.8e-16 89.0 51 74.5
THA.LOC104809758 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 3.8e-16 89.0 53 71.7
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 4.9e-16 88.6 54 72.2
arahy.Tifrunner.gnm1.ann1.FCJ5UL Arachis hypogaea HOM05D002859 ORTHO05D003120 6.4e-16 88.2 53 73.6
arahy.Tifrunner.gnm1.ann1.J0PFQP Arachis hypogaea HOM05D002859 ORTHO05D003120 6.4e-16 88.2 53 73.6
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 6.4e-16 88.2 54 72.2
CANSAT54G1349 Cannabis sativa HOM05D002859 ORTHO05D003120 8.4e-16 87.8 51 74.5
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 8.4e-16 87.8 54 72.2
RcHm_v2.0_Chr6g0249441 Rosa chinensis HOM05D002859 ORTHO05D003120 1.4e-15 87.0 97 47.4
VMungo1127G0800 Vigna mungo HOM05D002859 ORTHO05D003120 1.4e-15 87.0 53 73.6
Migut.C01404 Erythranthe guttata HOM05D002859 ORTHO05D003120 1.9e-15 86.7 54 72.2
FAN16G3232 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.9e-15 86.7 51 72.5
QL09p001171 Quercus lobata HOM05D002859 ORTHO05D003120 1.9e-15 86.7 51 74.5
HPP92_001196 Vanilla planifolia HOM05D002859 ORTHO05D003120 1.9e-15 86.7 53 67.9
Zm00001eb366350 Zea mays HOM05D002859 ORTHO05D003120 3.2e-15 85.9 53 71.7
ECA232G0801 Erigeron canadensis HOM05D002859 ORTHO05D003120 4.2e-15 85.5 54 72.2
Aqoxy6G00036 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 5.4e-15 85.1 53 67.9
Nitab4.5_0003598g0110 Nicotiana tabacum HOM05D002859 ORTHO05D003120 7.1e-15 84.7 50 78.0
Zm00001eb145940 Zea mays HOM05D002859 ORTHO05D003120 9.2e-15 84.3 53 69.8
HanXRQChr09g0266881 Helianthus annuus HOM05D002859 ORTHO05D003120 2.1e-14 83.2 49 73.5
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 2.7e-14 82.8 54 66.7
Lalb_Chr01g0000171 Lupinus albus HOM05D002859 ORTHO05D003120 7.8e-14 81.3 54 64.8
Glyma.09G234000 Glycine max HOM05D002859 ORTHO05D003120 5.1e-13 78.6 56 62.5
SEGI_19966 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 2.8e-11 72.8 47 63.8
CSS0008431 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 6.2e-11 71.6 43 74.4
CSS0035791 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 6.2e-11 71.6 43 74.4
CSS0035623 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.4e-10 70.5 69 53.6
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 2.6e-09 66.2 49 49.0
Pp3c1_32560 Physcomitrium patens HOM05D002859 ORTHO05D003120 2.6e-09 66.2 49 49.0
CSS0010716 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 3.4e-09 65.9 42 73.8
SGA_v2.0_scaffold118G32642 Striga asiatica HOM05D002859 ORTHO05D003120 3.4e-09 65.9 70 50.0
Peaxi162Scf00078g01124 Petunia axillaris HOM05D002859 ORTHO05D003120 5.8e-09 65.1 39 76.9
AagrBONN_evm.TU.Sc2ySwM_117.3205 Anthoceros agrestis HOM05D002859 ORTHO05D003120 1.3e-08 63.9 50 50.0
SEGI_07111 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 1.3e-08 63.9 49 53.1
MBI06_g46093_MAGBIO Magnolia biondii HOM05D002859 ORTHO05D003120 1.7e-08 63.5 34 73.5
SMO358G0157 Selaginella moellendorffii HOM05D002859 ORTHO05D003120 2.2e-08 63.2 50 52.0
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.9e-08 62.8 54 40.7
Nitab4.5_0009853g0030 Nicotiana tabacum HOM05D002859 ORTHO05D003120 8.4e-08 61.2 41 70.7
Nitab4.5_0001106g0150 Nicotiana tabacum HOM05D002859 ORTHO05D003120 2.4e-07 59.7 40 70.0
Potri.001G072300 Populus trichocarpa HOM05D002859 ORTHO05D003120 3.5e-06 55.8 52 48.1
CSS0030580 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 4.6e-06 55.5 50 46.0
PGR102G2374 Punica granatum HOM05D002859 ORTHO05D003120 6.0e-06 55.1 49 44.9
SEGI_41282 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 6.0e-06 55.1 49 49.0
Migut.C00325 Erythranthe guttata HOM05D002859 ORTHO05D003120 7.8e-06 54.7 49 49.0
LjContig00470g0013393 Lotus japonicus HOM05D002859 ORTHO05D003120 7.8e-06 54.7 50 44.0
Nitab4.5_0002113g0060 Nicotiana tabacum HOM05D002859 ORTHO05D003120 7.8e-06 54.7 49 46.9
SGA_v2.0_scaffold43G16338 Striga asiatica HOM05D002859 ORTHO05D003120 7.8e-06 54.7 58 43.1


User provided reference genes

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