Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.6e-297 1024.6 522 100.0
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 6.9e-197 691.0 525 68.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 1.3e-192 676.8 521 69.1
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.3e-192 676.0 539 66.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.8e-190 668.3 507 67.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.1e-189 665.6 521 67.6
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 4.0e-189 665.2 523 66.7
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.9e-187 658.3 524 66.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 6.4e-187 657.9 519 67.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.9e-186 656.4 524 65.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.9e-186 656.4 527 66.0
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.2e-186 655.2 568 62.3
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.5e-186 654.8 524 66.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 5.5e-186 654.8 524 66.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.2e-185 653.7 517 65.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.7e-185 652.5 520 65.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.7e-185 652.5 532 66.5
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 7.9e-185 651.0 483 68.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.9e-183 646.4 493 68.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.5e-183 646.0 525 65.1
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.3e-183 645.6 520 65.8
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.3e-183 645.2 522 64.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.6e-182 643.3 524 65.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.6e-182 643.3 523 65.2
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.1e-182 642.9 517 66.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 6.2e-182 641.3 519 65.1
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.2e-182 641.3 519 65.1
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 8.2e-182 641.0 540 64.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.1e-181 640.6 519 65.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.5e-180 636.7 520 64.6
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.0e-180 636.3 515 64.9
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.6e-180 634.4 517 65.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.7e-179 633.3 507 65.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.7e-179 633.3 517 64.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.7e-179 633.3 537 63.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.8e-179 632.1 507 65.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.5e-178 629.4 552 61.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.2e-178 629.0 507 65.3
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 2.1e-177 626.3 520 63.1
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.3e-176 623.6 518 64.5
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 3.9e-176 622.1 520 63.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 9.7e-175 617.5 535 61.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-173 613.2 484 64.9
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 9.0e-173 610.9 484 64.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.4e-172 609.0 499 64.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 4.5e-172 608.6 522 61.9
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-171 607.1 508 64.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 2.1e-169 599.7 511 62.6
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.2e-166 589.7 516 61.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 6.3e-166 588.2 523 61.4
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.8e-165 586.6 515 60.8
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.9e-163 579.3 507 60.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.1e-162 577.4 492 62.4
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 2.5e-162 576.2 524 58.8
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.6e-161 572.4 508 61.2
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 8.8e-160 567.8 530 59.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 9.7e-159 564.3 517 58.2
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.3e-158 563.9 431 68.7
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.7e-158 562.4 518 60.4
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.8e-158 562.0 517 60.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 4.8e-158 562.0 561 54.9
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 5.9e-156 555.1 507 59.0
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 6.5e-155 551.6 513 58.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-152 542.0 517 57.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 5.5e-146 521.9 502 56.0
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.5e-143 513.8 534 55.1
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.3e-143 512.7 485 58.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.0e-139 498.8 499 56.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 5.0e-139 498.8 512 54.1
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 6.5e-139 498.4 404 65.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-138 497.3 499 56.7
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.7e-137 493.0 556 53.1
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.7e-137 492.3 492 55.5
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.3e-136 490.0 409 63.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 2.7e-132 476.5 473 53.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.6e-121 440.7 493 48.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.5e-116 422.9 325 67.4
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.8e-112 410.6 343 64.1
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.9e-110 403.3 500 49.8
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 3.7e-110 402.9 353 59.8
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.6e-108 397.5 422 52.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-101 374.8 387 53.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 6.6e-91 339.0 465 44.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 5.3e-88 329.3 484 43.2
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.0e-83 313.5 411 49.9
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 7.1e-77 292.4 463 38.7
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-75 288.1 468 38.7
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.3e-74 283.1 278 58.3
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-73 280.0 455 38.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.8e-73 279.6 458 39.3
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.0e-72 275.4 469 37.7
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.5e-71 274.6 458 38.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 5.8e-71 272.7 201 68.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.3e-70 271.6 474 37.3
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.7e-70 271.2 457 38.3
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.2e-70 270.8 458 39.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 4.9e-70 269.6 455 39.8
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-69 268.5 466 38.2
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-68 265.0 454 37.4
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 7.9e-68 262.3 435 37.9
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.9e-68 262.3 447 39.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-67 261.5 431 39.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.0e-67 260.4 461 37.5
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.1e-66 258.5 459 38.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 6.9e-64 249.2 460 35.0
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 6.9e-64 249.2 497 36.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 4.5e-63 246.5 460 34.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-62 245.0 476 37.2
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.2e-62 244.2 450 35.1
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 8.4e-62 242.3 459 35.1
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-61 241.1 381 41.7
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-61 238.8 439 36.9
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 2.1e-60 237.7 439 36.4
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-60 237.7 439 36.7
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 3.5e-60 236.9 446 36.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 4.6e-60 236.5 455 37.4
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.6e-60 236.5 431 36.2
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 7.9e-60 235.7 450 36.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.3e-59 234.2 450 36.0
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.3e-59 234.2 453 36.0
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.9e-55 219.5 456 35.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-54 217.2 427 36.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 8.5e-54 215.7 415 36.1
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-53 214.9 441 34.0
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.2e-53 213.8 503 31.6
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 3.2e-53 213.8 598 29.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.5e-53 213.0 443 34.3
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 9.4e-53 212.2 166 65.1
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 6.7e-51 206.1 377 34.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 4.3e-50 203.4 379 36.7
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.2e-41 174.5 461 31.2
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.8e-40 171.4 151 54.3
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-39 168.3 413 32.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-39 167.9 420 30.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.1e-36 157.9 282 36.2
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.0e-35 154.1 266 38.0
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.3e-34 150.6 217 43.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.3e-32 143.3 240 37.9
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.1e-32 142.5 276 35.9
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-31 142.1 189 48.7
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.1e-28 131.3 108 56.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.7e-28 130.2 96 67.7
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 3.7e-25 120.6 157 44.6
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.1e-24 117.1 266 33.8
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 4.1e-24 117.1 311 29.9
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 5.4e-24 116.7 322 28.9
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.0e-22 112.5 181 37.6
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 8.5e-22 109.4 163 41.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 5.5e-21 106.7 399 28.3
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.6e-20 104.0 107 53.3
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.8e-19 99.8 153 40.5
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.5e-18 98.6 117 43.6
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-17 95.5 250 28.8
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.3e-17 95.5 60 75.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.7e-17 95.1 321 27.4
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.8e-17 94.4 143 38.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-15 89.0 61 68.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-15 89.0 83 55.4
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.3e-14 85.5 65 58.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.7e-14 85.1 80 55.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 1.9e-13 81.6 114 43.9
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 3.3e-13 80.9 56 67.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-12 79.0 150 34.0
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.2e-12 79.0 93 47.3
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.2e-12 79.0 81 49.4
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 2.8e-12 77.8 178 25.8
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 3.0e-11 74.3 90 46.7
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-11 74.3 60 58.3
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.0e-11 73.9 139 33.1
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.5e-10 72.0 104 38.5
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-10 71.6 101 46.5
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 2.6e-10 71.2 60 56.7
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 3.4e-10 70.9 128 32.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 7.5e-10 69.7 168 32.7
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-09 68.9 120 30.8
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.2e-09 68.2 73 53.4
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.7e-09 67.4 84 51.2
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-08 65.9 83 45.8
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.2e-08 64.3 81 44.4
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 2.7e-07 61.2 158 32.3
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-06 58.2 42 59.5


User provided reference genes

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