Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 5.9e-189 664.1 341 100.0
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 7.3e-123 444.5 315 69.8
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 8.9e-121 437.6 329 66.3
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 2.4e-118 429.5 298 71.5
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.2e-117 427.2 296 71.6
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.6e-115 418.3 316 67.7
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 5.6e-115 418.3 324 68.8
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 9.6e-115 417.5 325 66.8
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 2.1e-114 416.4 325 65.5
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 2.8e-114 416.0 323 67.8
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.6e-114 415.6 316 67.4
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.6e-114 415.6 316 67.4
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.8e-114 415.2 316 67.4
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 6.2e-114 414.8 317 66.2
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 2.4e-113 412.9 332 64.2
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 2.4e-113 412.9 315 66.7
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 5.3e-113 411.8 320 66.9
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 9.0e-113 411.0 315 66.3
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 1.5e-112 410.2 314 67.5
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.5e-112 410.2 314 66.2
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 2.0e-112 409.8 317 65.6
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 2.0e-112 409.8 314 66.2
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 2.6e-112 409.5 324 65.7
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 2.6e-112 409.5 324 66.0
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 4.4e-112 408.7 315 64.8
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 2.2e-111 406.4 314 66.9
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 3.8e-111 405.6 317 66.6
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 4.9e-111 405.2 324 66.0
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 6.4e-111 404.8 323 65.3
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 5.4e-110 401.7 318 64.5
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 4.6e-109 398.7 318 63.8
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 6.0e-109 398.3 318 66.0
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 1.7e-108 396.7 318 63.8
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 3.9e-108 395.6 323 62.2
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 1.5e-107 393.7 319 63.9
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 2.5e-107 392.9 318 64.8
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 2.5e-107 392.9 324 63.6
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 9.6e-107 391.0 299 66.2
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 9.6e-107 391.0 318 64.5
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 9.6e-107 391.0 316 66.1
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.1e-106 389.8 301 66.8
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 6.2e-106 388.3 359 59.6
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.8e-105 386.7 318 64.5
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 1.8e-105 386.7 331 61.0
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.0e-105 385.6 309 64.1
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 5.3e-105 385.2 318 63.8
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 1.2e-104 384.0 317 63.7
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 1.2e-104 384.0 322 61.2
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 2.0e-104 383.3 307 65.8
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 2.6e-104 382.9 324 61.4
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 5.8e-104 381.7 318 63.2
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 5.8e-104 381.7 323 63.8
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 1.3e-103 380.6 300 65.0
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 1.7e-103 380.2 297 69.4
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.1e-101 373.2 316 63.0
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.7e-101 372.9 314 62.4
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 4.6e-101 372.1 315 61.6
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 4.6e-101 372.1 327 59.3
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 4.6e-101 372.1 326 60.4
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 1.4e-97 360.5 328 57.3
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 2.2e-95 353.2 280 68.6
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 6.5e-95 351.7 307 60.6
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 9.3e-94 347.8 325 57.2
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 1.2e-93 347.4 334 56.3
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 1.1e-91 340.9 266 66.9
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 1.5e-91 340.5 290 61.7
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 3.3e-91 339.3 315 56.8
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 1.3e-90 337.4 298 59.7
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 1.6e-90 337.0 275 63.6
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 6.3e-90 335.1 320 55.3
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 3.4e-88 329.3 326 57.4
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.9e-88 328.6 311 58.2
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 1.7e-87 327.0 376 50.5
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 3.8e-87 325.9 320 58.8
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.4e-81 306.6 283 59.0
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 1.7e-79 300.4 325 49.8
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 1.7e-79 300.4 294 55.8
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 4.6e-77 292.4 214 67.3
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 7.4e-75 285.0 325 50.2
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 3.1e-73 279.6 202 66.3
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.9e-72 275.4 320 51.2
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 1.1e-70 271.2 199 67.3
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-70 270.8 316 52.5
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 7.2e-70 268.5 193 67.9
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.4e-70 268.1 233 60.9
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 9.4e-70 268.1 320 52.8
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.2e-69 267.7 317 50.8
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 2.1e-69 266.9 314 47.8
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.7e-69 265.8 312 50.6
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.0e-65 251.9 316 48.4
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.2e-64 251.1 176 69.9
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 8.5e-63 245.0 274 55.8
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-57 227.6 164 69.5
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 1.7e-55 220.7 349 37.8
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 2.0e-51 207.2 170 62.9
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 2.0e-51 207.2 164 63.4
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 1.8e-49 200.7 161 59.6
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 3.8e-47 193.0 307 37.5
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 2.5e-46 190.3 144 61.1
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 5.5e-46 189.1 200 46.5
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 1.6e-45 187.6 173 56.6
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 4.1e-33 146.4 292 37.0
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.6e-29 134.4 157 47.8
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 8.0e-29 132.1 257 37.0
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 6.8e-20 102.4 98 54.1
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 8.3e-18 95.5 69 66.7
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 3.5e-16 90.1 110 50.0
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 2.3e-15 87.4 88 56.8
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 2.6e-11 73.9 327 24.5
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 1.7e-07 61.2 41 68.3


User provided reference genes

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