Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0005410 Simmondsia chinensis HOM05D006506 ORTHO05D007809 1.3e-146 523.1 267 100.0
AUR62030047 Chenopodium quinoa HOM05D006506 ORTHO05D007809 8.6e-103 377.5 265 74.3
Ah.08g214330 Amaranthus hybridus HOM05D006506 ORTHO05D007809 4.0e-100 368.6 266 71.4
EL10Ac7g17638 Beta vulgaris HOM05D006506 ORTHO05D007809 7.5e-99 364.4 257 72.8
AUR62002633 Chenopodium quinoa HOM05D006506 ORTHO05D007809 2.9e-90 335.9 240 73.3
Lj2g0016250 Lotus japonicus HOM05D006506 ORTHO05D007809 3.0e-87 325.9 287 59.6
TAR371G0436 Trochodendron aralioides HOM05D006506 ORTHO05D007809 3.9e-87 325.5 286 60.5
Actinidia15748 Actinidia chinensis HOM05D006506 ORTHO05D007809 6.6e-87 324.7 292 58.6
arahy.Tifrunner.gnm1.ann1.9QS0XN Arachis hypogaea HOM05D006506 ORTHO05D007809 8.6e-87 324.3 285 61.1
arahy.Tifrunner.gnm1.ann1.SP1H5F Arachis hypogaea HOM05D006506 ORTHO05D007809 8.6e-87 324.3 285 60.7
Potri.001G201700 Populus trichocarpa HOM05D006506 ORTHO05D007809 3.3e-86 322.4 283 58.0
Rhsim08G0211600 Rhododendron simsii HOM05D006506 ORTHO05D007809 5.6e-86 321.6 292 58.2
Haze_13452 Corylus avellana HOM05D006506 ORTHO05D007809 7.3e-86 321.2 285 58.6
Cfa001948 Carpinus fangiana HOM05D006506 ORTHO05D007809 1.6e-85 320.1 285 58.2
COL.COLO4_11906 Corchorus olitorius HOM05D006506 ORTHO05D007809 1.6e-85 320.1 285 57.9
CiPaw.01G249400 Carya illinoinensis HOM05D006506 ORTHO05D007809 2.1e-85 319.7 285 57.2
Phvul.004G032600 Phaseolus vulgaris HOM05D006506 ORTHO05D007809 2.8e-85 319.3 284 59.2
ECA232G3059 Erigeron canadensis HOM05D006506 ORTHO05D007809 3.6e-85 318.9 288 58.7
CSS0043074 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 4.7e-85 318.5 292 57.9
HanXRQChr16g0500351 Helianthus annuus HOM05D006506 ORTHO05D007809 1.1e-84 317.4 289 57.8
vmacro19011 Vaccinium macrocarpon HOM05D006506 ORTHO05D007809 1.4e-84 317.0 289 57.8
CSS0005655 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 1.8e-84 316.6 292 57.5
GSVIVG01017366001 Vitis vinifera HOM05D006506 ORTHO05D007809 1.8e-84 316.6 289 57.1
Thecc.06G030600 Theobroma cacao HOM05D006506 ORTHO05D007809 5.2e-84 315.1 285 56.8
Duzib160G0645 Durio zibethinus HOM05D006506 ORTHO05D007809 6.8e-84 314.7 285 56.8
Lalb_Chr06g0175141 Lupinus albus HOM05D006506 ORTHO05D007809 6.8e-84 314.7 291 58.1
Dinv38132 Davidia involucrata HOM05D006506 ORTHO05D007809 1.5e-83 313.5 293 57.0
MD17G1214300 Malus domestica HOM05D006506 ORTHO05D007809 1.5e-83 313.5 285 57.2
PGR031G2298 Punica granatum HOM05D006506 ORTHO05D007809 4.4e-83 312.0 288 59.0
DCAR_021353 Daucus carota HOM05D006506 ORTHO05D007809 5.8e-83 311.6 291 56.7
Duzib160G0598 Durio zibethinus HOM05D006506 ORTHO05D007809 5.8e-83 311.6 285 56.5
PSO210G7208 Papaver somniferum HOM05D006506 ORTHO05D007809 7.6e-83 311.2 285 56.5
Glyma.13G059800 Glycine max HOM05D006506 ORTHO05D007809 9.9e-83 310.8 285 56.5
MBI06_g17213_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 9.9e-83 310.8 281 58.4
Sabra01G0159300 Salix brachista HOM05D006506 ORTHO05D007809 1.3e-82 310.5 283 56.2
VMungo0464G1487 Vigna mungo HOM05D006506 ORTHO05D007809 1.3e-82 310.5 286 57.3
Lsat_1_v5_gn_4_87520 Lactuca sativa HOM05D006506 ORTHO05D007809 2.2e-82 309.7 288 56.9
Peaxi162Scf00553g00510 Petunia axillaris HOM05D006506 ORTHO05D007809 2.9e-82 309.3 293 57.0
Prupe.3G090200 Prunus persica HOM05D006506 ORTHO05D007809 2.9e-82 309.3 285 56.5
PGSC0003DMG400014148 Solanum tuberosum HOM05D006506 ORTHO05D007809 2.9e-82 309.3 293 56.0
CsaV3_7G032300 Cucumis sativus L. HOM05D006506 ORTHO05D007809 4.9e-82 308.5 285 57.2
TWI75G0153 Tripterygium wilfordii HOM05D006506 ORTHO05D007809 4.9e-82 308.5 285 55.1
Sp1g39080 Schrenkiella parvula HOM05D006506 ORTHO05D007809 8.4e-82 307.8 285 56.8
Sed0005275 Sechium edule HOM05D006506 ORTHO05D007809 8.4e-82 307.8 285 56.5
Carub.0001s4149 Capsella rubella HOM05D006506 ORTHO05D007809 1.4e-81 307.0 285 56.5
MELO3C023430.2 Cucumis melo HOM05D006506 ORTHO05D007809 1.9e-81 306.6 285 56.5
Cc04_g04540 Coffea canephora HOM05D006506 ORTHO05D007809 2.4e-81 306.2 289 56.4
Aa31LG10G2470 Aethionema arabicum HOM05D006506 ORTHO05D007809 4.2e-81 305.4 285 56.1
BcaC08g44001 Brassica carinata HOM05D006506 ORTHO05D007809 4.2e-81 305.4 285 56.1
BraA05t20791Z Brassica rapa HOM05D006506 ORTHO05D007809 4.2e-81 305.4 285 56.8
Ca_04862_v3 Cicer arietinum L. HOM05D006506 ORTHO05D007809 4.2e-81 305.4 285 57.2
Ciclev10026100m.g Citrus clementina HOM05D006506 ORTHO05D007809 4.2e-81 305.4 286 55.9
Migut.I00752 Erythranthe guttata HOM05D006506 ORTHO05D007809 4.2e-81 305.4 273 59.7
Thhalv10011665m.g Eutrema salsugineum HOM05D006506 ORTHO05D007809 4.2e-81 305.4 285 56.5
A05p18940 Brassica napus HOM05D006506 ORTHO05D007809 5.4e-81 305.1 285 56.8
CARHR042650 Cardamine hirsuta HOM05D006506 ORTHO05D007809 7.1e-81 304.7 285 56.8
Gohir.D06G120300 Gossypium hirsutum HOM05D006506 ORTHO05D007809 7.1e-81 304.7 285 55.8
AL1G60780 Arabidopsis lyrata HOM05D006506 ORTHO05D007809 9.3e-81 304.3 285 56.1
BcaB02g10986 Brassica carinata HOM05D006506 ORTHO05D007809 9.3e-81 304.3 285 56.1
Gohir.A06G107700 Gossypium hirsutum HOM05D006506 ORTHO05D007809 9.3e-81 304.3 285 55.8
Gorai.010G138400 Gossypium raimondii HOM05D006506 ORTHO05D007809 9.3e-81 304.3 285 55.8
AT1G52530 Arabidopsis thaliana HOM05D006506 ORTHO05D007809 1.2e-80 303.9 285 56.1
Sopen03g036430 Solanum pennellii HOM05D006506 ORTHO05D007809 2.1e-80 303.1 293 53.9
MSTRG.11150 Avicennia marina HOM05D006506 ORTHO05D007809 2.7e-80 302.8 284 57.4
CANSAT56G2592 Cannabis sativa HOM05D006506 ORTHO05D007809 3.5e-80 302.4 285 56.5
Cpa.g.sc67.28 Carica papaya HOM05D006506 ORTHO05D007809 4.6e-80 302.0 285 56.5
Nitab4.5_0005461g0020 Nicotiana tabacum HOM05D006506 ORTHO05D007809 6.0e-80 301.6 293 55.6
Nitab4.5_0010868g0010 Nicotiana tabacum HOM05D006506 ORTHO05D007809 7.8e-80 301.2 293 55.3
Psat1g070040 Pisum sativum HOM05D006506 ORTHO05D007809 3.9e-79 298.9 284 56.0
C06p14060 Brassica napus HOM05D006506 ORTHO05D007809 8.7e-79 297.7 285 55.1
BolC6t36584H Brassica oleracea HOM05D006506 ORTHO05D007809 8.7e-79 297.7 285 55.1
CAN.G407.9 Capsicum annuum HOM05D006506 ORTHO05D007809 8.7e-79 297.7 293 53.6
Medtr1g082730 Medicago truncatula HOM05D006506 ORTHO05D007809 1.1e-78 297.4 284 55.3
SHI11239 Sapria himalayana HOM05D006506 ORTHO05D007809 1.9e-78 296.6 289 54.0
TPR.G16552 Trifolium pratense HOM05D006506 ORTHO05D007809 7.3e-78 294.7 284 54.9
Ciclev10027407m.g Citrus clementina HOM05D006506 ORTHO05D007809 8.1e-77 291.2 281 54.4
FAN05G2665 Fragaria x ananassa HOM05D000001 ORTHO05D007809 1.8e-76 290.0 285 54.7
FAN09G0903 Fragaria x ananassa HOM05D006506 ORTHO05D007809 1.8e-76 290.0 285 54.7
RcHm_v2.0_Chr2g0134931 Rosa chinensis HOM05D006506 ORTHO05D007809 2.4e-76 289.7 285 54.0
Oeu027841.1 Olea europaea HOM05D006506 ORTHO05D007809 6.9e-76 288.1 286 54.9
FAN02G0099 Fragaria x ananassa HOM05D006506 ORTHO05D007809 9.0e-76 287.7 285 54.4
FAN14G4998 Fragaria x ananassa HOM05D000001 ORTHO05D007809 9.0e-76 287.7 285 54.4
HPP92_007331 Vanilla planifolia HOM05D006506 ORTHO05D007809 9.0e-76 287.7 283 53.4
Duzib235G0689 Durio zibethinus HOM05D006506 ORTHO05D007809 1.2e-75 287.3 287 53.3
SGA_v2.0_scaffold37G14756 Striga asiatica HOM05D006506 ORTHO05D007809 1.2e-75 287.3 284 54.6
FvH4_6g29440 Fragaria vesca HOM05D006506 ORTHO05D007809 3.4e-75 285.8 285 54.0
SalBow2G1795 Salvia bowleyana HOM05D006506 ORTHO05D007809 9.9e-75 284.3 277 54.2
unitig_62.g23595 Utricularia gibba HOM05D006506 ORTHO05D007809 1.3e-74 283.9 285 54.7
Ciclev10027064m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.9e-74 282.7 286 52.8
Ciclev10027493m.g Citrus clementina HOM05D006506 ORTHO05D007809 8.4e-74 281.2 286 53.1
Manes.11G058300 Manihot esculenta HOM05D006506 ORTHO05D007809 8.4e-74 281.2 228 61.0
SEGI_33428 Sequoiadendron giganteum HOM05D006506 ORTHO05D007809 5.4e-73 278.5 282 52.5
Pp3c1_24880 Physcomitrium patens HOM05D006506 ORTHO05D007809 6.0e-72 275.0 280 53.2
Ciclev10027055m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.0e-71 274.2 277 53.1
THA.LOC104818016 Tarenaya hassleriana HOM05D006506 ORTHO05D007809 6.6e-71 271.6 227 61.2
ATR0605G102 Amborella trichopoda HOM05D006506 ORTHO05D007809 2.5e-70 269.6 281 53.0
AagrBONN_evm.TU.Sc2ySwM_117.4079 Anthoceros agrestis HOM05D006506 ORTHO05D007809 2.5e-70 269.6 277 52.0
Os04g0528400 Oryza sativa ssp. japonica HOM05D006506 ORTHO05D007809 2.5e-70 269.6 292 50.7
Aqoxy7G02198 Aquilegia oxysepala HOM05D006506 ORTHO05D007809 1.2e-67 260.8 257 54.9
Lj9E498T1 Lonicera japonica HOM05D006506 ORTHO05D007809 2.0e-67 260.0 215 62.3
Solyc03g117530.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 2.0e-67 260.0 268 51.9
HPP92_007333 Vanilla planifolia HOM05D006506 ORTHO05D007809 1.3e-66 257.3 278 51.4
Ciclev10026188m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.7e-66 256.9 281 50.2
SMO115G0207 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 3.2e-65 252.7 278 49.6
Mapoly0090s0026 Marchantia polymorpha HOM05D006506 ORTHO05D007809 6.0e-64 248.4 277 49.8
Ciclev10027054m.g Citrus clementina HOM05D006506 ORTHO05D007809 7.9e-64 248.1 228 57.5
CBR_g8656 Chara braunii HOM05D006506 ORTHO05D007809 1.5e-59 233.8 281 47.0
Zm00001eb427100 Zea mays HOM05D006506 ORTHO05D007809 7.9e-56 221.5 287 42.9
CDE08G0717 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 1.1e-54 217.6 197 55.8
Ciclev10027056m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.2e-50 203.4 264 46.2
Atru.chr1.2888 Acer truncatum HOM05D006506 ORTHO05D007809 3.1e-44 183.0 219 48.9
CDE11G1201 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 3.0e-39 166.4 244 43.0
Cre12.g524350 Chlamydomonas reinhardtii HOM05D006506 ORTHO05D007809 5.9e-27 125.6 226 36.7
SMO018G0003 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 6.5e-26 122.1 109 59.6
Ciclev10027644m.g Citrus clementina HOM05D006506 ORTHO05D007809 6.7e-23 112.1 96 56.2
PRCOL_00003381 Prasinoderma coloniale HOM05D006506 ORTHO05D007809 3.7e-21 106.3 247 34.4
ATR0068G037 Amborella trichopoda HOM05D006506 ORTHO05D007809 1.4e-20 104.4 113 53.1
Prupe.2G072500 Prunus persica HOM05D006506 ORTHO05D007809 2.9e-18 96.7 238 33.6
Ciclev10026990m.g Citrus clementina HOM05D006506 ORTHO05D007809 3.2e-17 93.2 96 52.1
MBI08_g32097_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 1.8e-15 87.4 71 60.6
MCO05G139 Micromonas commoda HOM05D006506 ORTHO05D007809 3.4e-14 83.2 290 29.3
Solyc04g026070.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 8.0e-08 62.0 84 39.3
TPR.G26194 Trifolium pratense HOM05D002479 ORTHO05D007809 3.0e-07 60.1 104 32.7


User provided reference genes

Program Settings