Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1728.8 922 100.0
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 0.0e+00 1111.3 907 66.5
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 0.0e+00 1082.0 935 62.9
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1076.2 928 63.1
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.6e-310 1069.3 941 63.8
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 6.4e-307 1057.4 932 62.1
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.1e-305 1052.4 921 60.6
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.0e-304 1048.5 929 62.3
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 8.2e-302 1040.4 909 62.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 3.1e-301 1038.5 971 59.6
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 1.1e-298 1030.0 915 61.0
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 7.9e-297 1023.8 881 62.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.9e-295 1019.2 932 60.1
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 7.4e-295 1017.3 935 60.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.8e-294 1015.4 928 60.1
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.4e-293 1013.1 914 60.7
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.4e-293 1013.1 927 58.6
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.8e-293 1012.7 915 60.0
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 6.9e-293 1010.7 933 59.2
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 2.0e-292 1009.2 924 59.3
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 3.4e-292 1008.4 932 59.0
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 6.5e-291 1004.2 927 59.1
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.7e-289 998.8 927 58.8
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 4.6e-289 998.0 927 57.9
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.1e-289 997.7 934 59.9
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 6.1e-289 997.7 937 58.9
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.0e-288 995.3 928 58.7
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.0e-288 995.3 937 58.3
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.5e-287 993.0 926 60.3
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 7.4e-287 990.7 938 58.1
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.7e-286 989.6 929 58.1
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 6.3e-286 987.6 936 57.7
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.0e-283 980.3 925 59.5
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 4.2e-282 974.9 912 58.8
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 4.2e-282 974.9 886 59.6
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.6e-279 965.7 933 56.2
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 4.4e-279 964.9 910 58.1
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 6.3e-278 961.1 893 59.0
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 9.1e-277 957.2 859 59.3
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.2e-276 956.8 899 59.1
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.5e-276 956.4 863 59.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.6e-276 955.7 909 56.9
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.9e-276 954.5 936 56.3
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.8e-275 951.8 933 57.0
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 4.7e-273 944.9 934 56.7
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.0e-273 944.1 885 59.8
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.3e-272 942.6 922 57.5
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 4.4e-271 938.3 938 56.5
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 7.4e-271 937.6 906 55.4
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 7.4e-271 937.6 938 56.2
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.8e-270 935.6 927 56.4
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 9.1e-269 930.6 939 55.9
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 9.1e-269 930.6 928 56.4
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 4.5e-268 928.3 907 56.9
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.2e-267 926.0 899 56.1
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 8.5e-267 924.1 928 55.5
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.5e-266 923.3 927 55.6
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 5.5e-266 921.4 910 54.6
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 9.4e-266 920.6 882 57.8
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.6e-265 919.8 926 55.1
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 4.0e-264 915.2 865 57.7
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.0e-263 912.9 898 57.0
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.3e-263 912.1 914 55.0
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.2e-262 909.4 929 55.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 7.0e-261 904.4 897 55.2
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.7e-259 899.8 972 53.2
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 2.7e-257 892.5 868 55.9
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.4e-253 880.2 931 53.7
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 7.0e-253 877.9 836 59.0
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 5.9e-252 874.8 930 53.2
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.5e-250 870.2 866 55.3
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 3.3e-250 869.0 923 53.5
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 4.2e-250 868.6 931 52.7
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 4.2e-250 868.6 925 52.8
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.6e-247 859.4 915 53.2
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 7.5e-247 857.8 858 54.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.4e-245 852.8 911 53.5
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.2e-244 850.5 859 53.9
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 2.9e-243 845.9 915 53.1
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 5.0e-243 845.1 864 53.9
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.9e-242 843.2 911 52.9
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.9e-242 843.2 911 52.9
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.4e-240 837.0 797 57.0
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 4.0e-240 835.5 909 51.8
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 2.0e-239 833.2 856 52.8
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 6.0e-236 821.6 751 59.4
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 6.6e-235 818.1 854 55.7
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 8.6e-235 817.8 806 57.1
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 4.9e-230 802.0 930 49.1
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 7.0e-229 798.1 650 65.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 3.0e-227 792.7 880 48.9
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 8.6e-219 764.6 909 49.6
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.8e-216 756.9 779 53.4
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 8.4e-206 721.5 807 49.1
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.4e-192 677.6 550 62.9
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 3.0e-187 659.8 679 56.0
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 5.0e-174 615.9 551 57.9
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 4.8e-169 599.4 611 52.0
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 1.0e-163 581.6 890 40.2
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.8e-163 580.9 877 40.8
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.1e-157 561.6 910 37.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.9e-157 560.8 711 47.7
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.2e-157 560.1 894 37.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.2e-153 547.4 801 44.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 1.1e-149 535.0 476 59.9
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 3.6e-140 503.4 917 36.8
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.1e-133 481.9 405 66.7
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.6e-122 444.1 479 53.2
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 9.2e-112 409.1 348 63.8
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.2e-108 396.4 451 52.8
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 2.6e-106 391.0 397 55.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 1.4e-99 368.6 917 32.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 2.6e-98 364.4 957 32.1
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.3e-89 335.5 991 28.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.5e-85 322.0 341 54.8
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 3.8e-81 307.4 309 52.8
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 5.5e-80 303.5 288 54.2
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 3.7e-76 290.8 951 27.4
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.6e-71 273.9 458 43.2
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.8e-67 261.9 265 53.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-66 257.3 180 72.8
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.1e-59 236.1 256 53.5
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 4.5e-58 230.7 218 55.5
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-52 212.6 339 42.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.2e-52 211.8 397 41.3
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 3.8e-49 201.1 159 62.9
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.4e-46 192.6 171 58.5
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.7e-45 186.4 284 38.4
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 3.0e-38 164.9 133 63.2
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 2.7e-34 151.8 136 56.6
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.5e-32 146.0 181 44.8
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 8.0e-31 140.2 171 53.8
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.2e-28 132.1 128 56.2
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 9.1e-27 126.7 176 47.7
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.6e-26 125.9 97 69.1
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.1e-19 101.3 154 35.1
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.4e-19 100.9 94 59.6
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-16 92.8 150 44.0
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.3e-16 91.3 70 68.6
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.0e-14 86.7 92 54.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 138 42.0
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.8e-14 85.9 174 39.7
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-12 79.7 49 75.5
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 3.5e-10 71.6 67 56.7
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-09 70.1 67 58.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.3e-08 65.1 96 40.6


User provided reference genes

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