Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.4e-75 285.0 156 100.0
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-28 130.6 160 54.4
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 5.0e-26 121.7 129 59.7
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.5e-25 119.4 177 49.7
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.5e-25 119.4 165 48.5
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 5.5e-25 118.2 144 45.8
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.8e-23 113.2 157 51.6
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 3.9e-23 112.1 159 50.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 6.7e-23 111.3 128 51.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.1e-22 110.5 148 52.7
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.5e-22 110.2 123 52.0
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.5e-22 110.2 155 47.7
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-22 110.2 159 47.8
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.0e-22 109.8 173 39.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.0e-22 109.8 152 50.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.4e-22 107.8 131 53.4
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.7e-22 107.5 129 53.5
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.3e-21 107.1 118 55.9
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.7e-21 106.7 119 43.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 2.2e-21 106.3 140 47.1
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 2.2e-21 106.3 172 44.8
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-21 105.9 131 52.7
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.7e-21 105.5 136 52.9
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.3e-21 104.8 142 52.8
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.1e-20 102.4 177 40.1
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 3.1e-20 102.4 151 39.1
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.1e-20 102.4 144 50.7
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 9.1e-20 100.9 172 45.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 9.1e-20 100.9 155 51.0
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.5e-19 100.1 154 46.1
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.6e-19 99.4 153 47.7
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 5.9e-19 98.2 160 45.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.7e-19 97.8 159 42.1
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.0e-18 97.4 145 45.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-18 96.7 156 46.8
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.7e-18 96.7 142 46.5
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.7e-18 96.7 127 50.4
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.2e-18 96.3 56 64.3
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.2e-18 96.3 125 51.2
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 2.9e-18 95.9 147 49.7
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 5.0e-18 95.1 57 64.9
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 5.0e-18 95.1 57 64.9
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 6.5e-18 94.7 57 64.9
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 6.5e-18 94.7 56 67.9
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-17 94.0 122 45.9
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-17 93.6 118 53.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.4e-17 93.6 125 36.8
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.4e-17 93.6 128 39.8
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.9e-17 93.2 141 49.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.9e-17 93.2 153 41.2
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.9e-17 93.2 125 45.6
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.9e-17 93.2 57 63.2
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.5e-17 92.8 57 63.2
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.5e-17 92.8 57 63.2
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.5e-17 92.8 57 63.2
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.2e-17 92.4 57 63.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 4.2e-17 92.0 57 63.2
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.2e-17 92.0 57 63.2
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 4.2e-17 92.0 57 63.2
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 4.2e-17 92.0 131 42.7
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 5.5e-17 91.7 167 41.9
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.5e-17 91.7 114 40.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 5.5e-17 91.7 132 34.8
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 7.2e-17 91.3 57 63.2
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 7.2e-17 91.3 57 63.2
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 7.2e-17 91.3 57 63.2
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 7.2e-17 91.3 57 63.2
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 7.2e-17 91.3 187 41.2
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 7.2e-17 91.3 158 39.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 9.4e-17 90.9 57 61.4
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 9.4e-17 90.9 57 61.4
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 9.4e-17 90.9 157 45.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.2e-16 90.5 159 45.9
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.2e-16 90.5 159 45.9
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-16 90.5 130 48.5
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.6e-16 90.1 153 43.8
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.6e-16 90.1 152 46.7
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.6e-16 90.1 190 39.5
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.1e-16 89.7 114 39.5
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 4.7e-16 88.6 163 45.4
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 8.0e-16 87.8 121 48.8
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 8.0e-16 87.8 155 44.5
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 8.0e-16 87.8 151 47.7
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.0e-15 87.4 121 51.2
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.0e-15 87.4 121 51.2
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.0e-15 87.4 121 51.2
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.0e-15 87.4 121 51.2
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.0e-15 87.4 114 45.6
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.4e-15 87.0 128 50.0
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-15 87.0 164 39.6
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.4e-15 87.0 151 39.7
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.4e-15 87.0 151 39.7
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 3.0e-15 85.9 167 42.5
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 3.0e-15 85.9 160 35.6
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 3.9e-15 85.5 53 60.4
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.9e-15 85.5 156 34.0
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 6.7e-15 84.7 117 48.7
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 6.7e-15 84.7 136 46.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 6.7e-15 84.7 183 28.4
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 8.8e-15 84.3 155 44.5
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.8e-15 84.3 169 41.4
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 8.8e-15 84.3 124 46.8
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.1e-14 84.0 157 40.8
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.5e-14 83.6 55 58.2
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-14 83.6 52 57.7
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 4.4e-14 82.0 123 48.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.4e-14 82.0 175 41.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 4.4e-14 82.0 167 38.9
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 5.7e-14 81.6 179 39.1
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 5.7e-14 81.6 137 43.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.4e-14 81.3 177 40.1
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 7.4e-14 81.3 146 40.4
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.4e-14 81.3 113 43.4
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 9.7e-14 80.9 56 53.6
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-13 80.5 172 35.5
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.7e-13 80.1 56 51.8
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.7e-13 80.1 132 39.4
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.8e-13 79.3 169 35.5
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 8.2e-13 77.8 127 37.8
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-12 77.4 138 43.5
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.4e-12 77.0 171 40.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.4e-12 76.3 143 40.6
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.4e-12 76.3 150 43.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.4e-12 76.3 170 40.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.4e-12 76.3 147 42.9
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.4e-12 76.3 174 40.2
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 7.0e-12 74.7 175 38.3
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 7.0e-12 74.7 51 54.9
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.2e-11 73.9 48 60.4
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.2e-11 73.9 123 35.8
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.6e-11 73.6 158 39.9
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 2.0e-11 73.2 57 47.4
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.0e-11 73.2 153 39.9
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.5e-11 72.4 162 39.5
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.5e-11 72.4 52 53.8
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.9e-11 71.6 55 50.9
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.0e-10 70.9 44 61.4
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.7e-10 70.1 51 51.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.2e-10 69.7 51 52.9
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.8e-10 68.9 51 49.0
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 3.8e-10 68.9 51 49.0
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.8e-10 68.9 51 49.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.0e-10 68.6 51 49.0
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.0e-10 68.6 51 49.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 5.0e-10 68.6 51 51.0
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 6.5e-10 68.2 54 48.1
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 8.5e-10 67.8 54 44.4
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-09 67.4 51 45.1
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.1e-09 67.4 203 33.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.5e-09 67.0 54 48.1
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.5e-09 67.0 54 48.1
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 8.0e-08 61.2 151 35.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.2e-06 57.4 116 32.8


User provided reference genes

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